STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB3029Hypothetical protein-transmembrane prediction. (146 aa)    
Predicted Functional Partners:
RB3031
Hypothetical protein.
       0.648
RB3023
Similar to protease ecfE; PMID: 11689431 best DB hits: BLAST: ddbj:BAA09768.1; (D63481) The KIAA0147 gene product is related to; E=0.009 gb:AAK02818.1; (AE006110) HtrA [Pasteurella multocida]; E=0.038 swissprot:P37764; YAEL_ECOLI HYPOTHETICAL 49.1 KDA PROTEIN IN; E=0.056 COG: yaeL; COG0750 Predicted membrane-associated Zn-dependent proteases 1; E=0.005 PFAM: PF00595; PDZ domain (Also known as DHR or GLG; E=0.00026.
       0.462
RB3032
Conserved hypothetical protein; PMID: 11214968 best DB hits: BLAST: pir:S74039; hypothetical protein c0103 - Sulfolobus solfataricus; E=0.060 pir:T50944; hypothetical protein [imported] - Pseudomonas; E=0.62 PFAM: PF00452; Apoptosis regulator proteins, Bcl-2; E=0.19 PF01587; Monocarboxylate transporter; E=0.79.
       0.462
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.