STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB3034Hypothetical protein-signal peptide prediction. (838 aa)    
Predicted Functional Partners:
RB3036
Hypothetical protein.
 
     0.954
RB5421
PMID: 9406417 PMID: 11157277 best DB hits: BLAST: pir:T18266; cycloinulo-oligosaccharide fructanotransferase (EC; E=0.10 gb:AAG47946.1; AF222787_1 (AF222787) cycloinulo-oligosaccharide; E=0.22.
  
     0.769
RB5832
Hypothetical protein.
  
     0.764
RB6572
Hypothetical protein-signal peptide prediction.
  
     0.762
cft
Probable cycloinulo-oligosaccharide fructanotransferase; PMID: 11157277 best DB hits: BLAST: gb:AAG47946.1; AF222787_1 (AF222787) cycloinulo-oligosaccharide; E=2e-04 pir:T35944; probable beta-galactosidase - Streptomyces coelicolor; E=5e-04 pir:T18266; cycloinulo-oligosaccharide fructanotransferase (EC; E=0.030 PFAM: PF02012; BNR repeat; E=0.23.
  
     0.760
RB8835
Probable secreted alkaline phosphatase (fragment); Best DB hits: BLAST: embl:CAB99170.1; (AL390188) putative secreted alkaline; E=0.003 embl:CAC18240.1; (AL451018) conserved hypothetical protein; E=0.004 ddbj:BAA06483.1; (D30808) unknown [Bacillus subtilis]; E=0.10 PFAM: PF02908; Purple acid phosphatase, N-term; E=0.89 PF00041; Fibronectin type III domain; E=0.42.
  
     0.753
RB5524
Conserved hypothetical protein; PMID: 11759840 best DB hits: BLAST: embl:CAC19834.1; (AJ401093) hypothetical protein [Actinomyces; E=0.17.
  
     0.748
RB11033
PMID: 8843436 best DB hits: BLAST: embl:CAB89462.1; (AL354048) putative ABC transporter integral; E=2e-16 embl:CAC09551.1; (AL442120) putative ABC transport system; E=2e-11 embl:CAB62838.1; (AL133443) hypothetical protein L5529.07; E=3e-04 COG: AF1017; COG0577 Predicted permease; E=3e-05 PFAM: PF02687; Predicted permease; E=2.3e-12.
  
     0.739
RB10014
Hypothetical protein; Best DB hits: PFAM: PF01676; Metalloenzyme superfamily; E=0.19.
  
     0.733
RB1467
Hypothetical protein-transmembrane region and signal peptide prediction; Best DB hits: BLAST: gb:AAF87662.1; AF223645_1 (AF223645) lipase [uncultured bacterium]; E=0.54 PFAM: PF01738; Dienelactone hydrolase family; E=0.00062.
  
     0.733
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.