STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB3125Hypothetical protein. (135 aa)    
Predicted Functional Partners:
RB3123
Probable glycosyl hydrolases-putative kappa-carrageenase precursor; PMID: 98242082 best DB hits: BLAST: gb:AAF21820.1; AF098954_1 (AF098954) beta-agarase A precursor; E=1e-08 pir:T18265; endo-1,3(4)-beta-glucanase (EC 3.2.1.6) - Clostridium; E=2e-08 embl:CAC27412.1; (AJ307315) endo-1,3(4)-beta-glucanase; E=2e-08 COG: TM0024; COG2273 Beta-glucanase/Beta-glucan synthetase; E=5e-09 PFAM: PF00722; Glycosyl hydrolases family 16; E=0.15 PF02018; Cellulose binding domain; E=3.1e-05.
       0.689
RB3127
Hypothetical protein.
       0.572
RB3119
Hypothetical protein-signal peptide and transmembrane prediction.
       0.442
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.