STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB3172Hypothetical protein. (197 aa)    
Predicted Functional Partners:
RB3174
Ribosomal large subunit pseudouridine synthase B; PMID: 7934829 best DB hits: BLAST: swissprot:O67444; YE64_AQUAE HYPOTHETICAL PROTEIN AQ_1464 -----; E=4e-47 pir:T36871; probable pseudouridine synthase - Streptomyces; E=1e-40 swissprot:O33210; YH11_MYCTU HYPOTHETICAL 27.6 KDA PROTEIN RV1711; E=9e-38 COG: aq_1464; COG1187 16S rRNA uridine-516 pseudouridylate synthase and; E=3e-48 PFAM: PF01479; S4 domain; E=3.1e-11 PF00849; RNA pseudouridylate synthase; E=6.5e-13.
       0.773
RB3176
8-amino-7-oxononanoate synthase; PMID: 8763940 PMID: 9387221 best DB hits: BLAST: swissprot:P22806; BIOF_BACSH 8-AMINO-7-OXONONANOATE SYNTHASE; E=1e-57 swissprot:P53556; BIOF_BACSU 8-AMINO-7-OXONONANOATE SYNTHASE; E=7e-57 ddbj:BAB07626.1; (AP001520) 8-amino-7-oxononanoate synthase; E=2e-51 COG: BS_bioF; COG0156 7-keto-8-aminopelargonate synthetase and related; E=6e-58 PFAM: PF01053; Cys/Met metabolism PLP-depend; E=0.00067 PF00222; Aminotransferase class-II; E=1.6e-74.
       0.420
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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