STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB3213Hypothetical protein-transmembrane prediction; PMID: 11823852. (527 aa)    
Predicted Functional Partners:
speD
Probable S-adenosylmethionine decarboxylase proenzyme; Catalyzes the decarboxylation of S-adenosylmethionine to S- adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine.
 
     0.943
RB3221
Best DB hits: BLAST: pir:E69789; hypothetical protein ydjI - Bacillus subtilis -----; E=3e-25 gb:AAK05447.1; AE006367_3 (AE006367) UNKNOWN PROTEIN [Lactococcus; E=6e-06 ddbj:BAB05524.1; (AP001513) BH1805~unknown conserved protein in; E=7e-05.
 
  
 0.906
speE
Putative spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
 
     0.790
RB1639
Similar to monooxygenase; PMID: 11823852 best DB hits: BLAST: gb:AAF54264.1; (AE003680) CG8032 gene product [Drosophila; E=0.033 embl:CAB59668.1; (AL132674) monooxygenase. [Streptomyces; E=0.19 pir:A83453; probable flavin-containing monooxygenase PA1538; E=0.44 PFAM: PF01494; FAD binding domain; E=0.0018 PF00070; Pyridine nucleotide-disulphide; E=0.013 PF01593; Flavin containing amine oxidase; E=0.25.
 
     0.780
RB3208
Hypothetical protein-transmembrane prediction.
       0.779
RB3210
Hypothetical protein.
       0.773
RB3212
Hypothetical protein-signal peptide prediction.
       0.773
rtcR
Transcription regulator RtcR; PMID: 9738023 best DB hits: BLAST: pir:C83074; transcription regulator RtcR PA4581 [imported] -; E=1e-163 swissprot:P38035; RTCR_ECOLI TRANSCRIPTIONAL REGULATORY PROTEIN; E=1e-162 gb:AAA58220.1; (U18997) ORF_o532 [Escherichia coli]; E=1e-161 COG: rtcR_2; COG1221 NtrC family transcriptional regulators, ATPase; E=1e-111 atoC; COG2204 AAA superfamily ATPases with N-terminal receiver; E=8e-38 aq_218_2; COG1221 NtrC family transcriptional regulators, ATPase; E=3e-37 PFAM: PF00004; ATPase family associated with variou; E=0.29 PF00158; Sigma-54 interaction domain [...]
  
     0.517
ydjG
Best DB hits: BLAST: pir:C69789; hypothetical protein ydjG - Bacillus subtilis -----; E=2e-07 embl:CAA76859.1; (Y17797) hypothetical protein [Enterococcus; E=2e-07 gb:AAK05448.1; AE006367_4 (AE006367) HYPOTHETICAL PROTEIN; E=8e-04.
 
     0.471
RB13021
Conserved hypothetical protein-putative receptor protein kinase; PMID: 10731132 best DB hits: BLAST: gb:AAF82144.1; AC034256_8 (AC034256) Contains similarity to F-box; E=2e-07 gb:AAF44956.1; AE003406_161 (AE003416) symbol=BG:DS07108.4; E=1e-04 gb:AAF53475.1; (AE003648) BG:DS07108.4 gene product [Drosophila; E=1e-04.
  
     0.463
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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