STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB322Probable multidrug efflux pump; PMID: 9925549 best DB hits: BLAST: ddbj:BAA34299.1; (AB015853) MexX [Pseudomonas aeruginosa]; E=5e-05 pir:E82263; conserved hypothetical protein VC0913 [imported] -; E=5e-05 pir:A83342; conserved hypothetical protein PA2430 [imported] -; E=5e-05 COG: VC0913; COG0845 Membrane-fusion protein; E=4e-06 PA2430; COG1566 Multidrug resistance efflux pump; E=5e-06 PA2019; COG0845 Membrane-fusion protein; E=1e-05 PFAM: PF00364; Biotin-requiring enzyme; E=0.46 PF00529; HlyD family secretion protein; E=0.0014. (334 aa)    
Predicted Functional Partners:
czcB-2
PMID: 9537320 best DB hits: BLAST: pir:C70415; cation efflux system (czcB-like) - Aquifex aeolicus; E=1e-10 gb:AAK03081.1; (AE006139) unknown [Pasteurella multocida]; E=7e-09 pir:B82357; conserved hypothetical protein VC0165 [imported] -; E=5e-08 COG: aq_1331; COG0845 Membrane-fusion protein; E=1e-11 ydhJ; COG1566 Multidrug resistance efflux pump; E=7e-06 XF0244; COG0845 Membrane-fusion protein; E=3e-05 PFAM: PF00364; Biotin-requiring enzyme; E=0.14 PF00529; HlyD family secretion protein; E=0.0021.
  
     0.649
RB324
Hypothetical protein.
       0.566
RB146
Probable cation efflux system; PMID: 8203018 best DB hits: BLAST: pir:C70415; cation efflux system (czcB-like) - Aquifex aeolicus; E=2e-10 pir:B82357; conserved hypothetical protein VC0165 [imported] -; E=3e-10 ddbj:BAA34299.1; (AB015853) MexX [Pseudomonas aeruginosa]; E=5e-08 COG: aq_1331; COG0845 Membrane-fusion protein; E=2e-11 emrA; COG1566 Multidrug resistance efflux pump; E=0.003 PA3402; COG0845 Membrane-fusion protein; E=0.003 PFAM: PF00364; Biotin-requiring enzyme; E=0.0052 PF00529; HlyD family secretion protein; E=6.1e-07; Belongs to the membrane fusion protein (MFP) (TC 8.A.1 [...]
  
     0.520
RB327
Hypothetical protein.
       0.486
RB9308
Hypothetical protein-putative conserved hypothetical protein; Best DB hits: PFAM: PF02321; Outer membrane efflux protein; E=5.8e-06.
  
   0.464
RB9526
Conserved hypothetical protein-putative multidrug resistance efflux pump; Best DB hits: BLAST: pir:H82507; conserved hypothetical protein VCA0047 [imported] -; E=1e-42 swissprot:P32107; YIBH_ECOLI HYPOTHETICAL 42.0 KD PROTEIN IN; E=2e-27 swissprot:P37683; YIAV_ECOLI HYPOTHETICAL 41.8 KD PROTEIN IN; E=2e-23 COG: VCA0047; COG1566 Multidrug resistance efflux pump; E=1e-43 ybhG; COG0845 Membrane-fusion protein; E=2e-08 PA1237; COG1566 Multidrug resistance efflux pump; E=5e-08 PFAM: PF00529; HlyD family secretion protein; E=3.2e-10.
  
     0.449
RB7078
Hypothetical protein; Best DB hits: PFAM: PF02321; Outer membrane efflux protein; E=0.52.
  
   0.442
RB1125
PMID: 8181764 best DB hits: BLAST: pir:H82381; toxin secretion ATP-binding protein VCA1084 [imported] -; E=2e-12 pir:S75806; hemolysin secretion protein hlyB - Synechocystis sp; E=6e-12 gb:AAD21059.1; (AF119150) RtxB protein [Vibrio cholerae]; E=6e-12 COG: VCA1084; COG2274 ABC-type bacteriocin/lantibiotic exporters, contain; E=2e-13 sll1180_2; COG2274 ABC-type bacteriocin/lantibiotic exporters,; E=5e-13 VC1448; COG1132 ABC-type multidrug/protein/lipid transport system,; E=6e-13 PFAM: PF00664; ABC transporter transmembrane re; E=0.046 PF00005; ABC transporter; E=6.8e-06.
  
 
 0.428
RB7603
Best DB hits: BLAST: pir:T23334; hypothetical protein K04H8.3 - Caenorhabditis elegans; E=0.53 PFAM: PF02321; Outer membrane efflux protein; E=0.0021.
  
   0.407
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.