STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB3236Probable transporter; PMID: 9923682 PMID: 7890707 best DB hits: BLAST: pir:E71961; probable transporter - Helicobacter pylori (strain J99); E=2e-51 pir:F64546; sodium-dependent transporter - Helicobacter pylori; E=8e-51 ddbj:BAA96091.1; (AB043024) sodium sulfate or dicarboxylate; E=1e-45 COG: jhp0200; COG0471 Di- and tricarboxylate transporters; E=2e-52 PAB1107; COG1055 Na+/H+ antiporter NhaD and related arsenite; E=0.001 sll0640; COG0471 Di- and tricarboxylate transporters; E=0.006 PFAM: PF00939; Sodium:sulfate symporter transm; E=1.6e-12. (510 aa)    
Predicted Functional Partners:
RB3233
Hypothetical protein.
       0.773
RB3234
Possible gluconolactonase precursor; PMID: 1482681 best DB hits: BLAST: embl:CAB59581.1; (AL132662) possible gluconolactonase precursor; E=2e-26 pir:A75539; probable gluconolactonase - Deinococcus radiodurans; E=8e-20 pir:B82698; gluconolactonase precursor XF1297 [imported] - Xylella; E=8e-16 COG: DR0277; COG3386 Uncharacterized protein; E=8e-21.
       0.773
RB3237
Conserved hypothetical protein; Best DB hits: BLAST: pir:S34725; regulation protein - Serratia marcescens ----- embl:; E=3e-14 swissprot:P11555; FUCU_ECOLI FUCOSE OPERON FUCU PROTEIN -----; E=0.017 pir:H82496; ribose ABC transporter protein VCA0127 [imported] -; E=0.37 COG: fucU; COG1869 Uncharacterized components of ribose/xylose transport; E=0.002; Belongs to the RbsD / FucU family.
       0.773
RB3239
Probable D-tagatose 3-epimerase; Best DB hits: BLAST: swissprot:Q9WYP7; Y416_THEMA HYPOTHETICAL PROTEIN TM0416 -----; E=4e-13 swissprot:O50580; DT3E_PSECI D-TAGATOSE 3-EPIMERASE -----; E=8e-11 swissprot:P73599; YD04_SYNY3 HYPOTHETICAL 32.8 KDA PROTEIN SLL1304; E=4e-10 COG: TM0416; COG1082 Predicted endonucleases; E=4e-14.
       0.588
dur3
Urea transporter or sodium transporter; PMID: 8335627 best DB hits: BLAST: gb:AAB65069.1; (U11582) No definition line found [Saccharomyces; E=6e-16 gb:AAA34582.1; (L19875) Dur3 [Saccharomyces cerevisiae]; E=1e-15 ddbj:BAB09166.1; (AB018113) urea active transporter-like protein; E=3e-11 COG: YHL016c; COG0591 Na+/proline, Na+/panthothenate symporters and; E=6e-17 PFAM: PF00474; Sodium:solute symporter family; E=1.4e-07; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
   
 0.520
RB6538
Sodium/glucose cotransporter; PMID: 8652595 best DB hits: BLAST: swissprot:P31448; YIDK_ECOLI HYPOTHETICAL 62.1 KD PROTEIN IN; E=8e-94 gb:AAG58882.1; AE005599_14 (AE005599) putative cotransporter; E=2e-93 ddbj:BAB05941.1; (AP001514) Na+myo-inositol cotransporter; E=7e-87 COG: yidK; COG0591 Na+/proline, Na+/panthothenate symporters and related; E=8e-95 BH2222; COG0591 Na+/proline, Na+/panthothenate symporters and; E=7e-88 panF; COG0591 Na+/proline, Na+/panthothenate symporters and related; E=4e-11 PFAM: PF00474; Sodium:solute symporter family; E=2.8e-33; Belongs to the sodium:solute sym [...]
  
    0.488
dagA
Putative Na(+)-linked D-alanine glycine permease; PMID: 1447975 best DB hits: BLAST: embl:CAC01597.1; (AL391041) putative amino acid transport; E=1e-90 gb:AAF12563.1; AE001826_32 (AE001826) Na(+)-linked D-alanine; E=5e-81 ddbj:BAB07752.1; (AP001520) amino acid transporter [Bacillus; E=4e-46 COG: DRB0133; COG1115 Na+/alanine symporter; E=4e-82 PFAM: PF02497; Arterivirus glycoprotein; E=0.45 PF00746; Gram positive anchor; E=0.031 PF01235; Sodium:alanine symporter fami; E=5.2e-96.
  
    0.455
RB5641
Best DB hits: BLAST: pir:H81355; probable integral membrane protein Cj0832c [imported] -; E=2e-58 pir:D75220; hypothetical protein PAB2161 - Pyrococcus abyssi (strain; E=3e-54 pir:D71202; hypothetical protein PH1889 - Pyrococcus horikoshii; E=4e-52 COG: Cj0832c; COG1757 Na+/H+ antiporter; E=2e-59.
  
  
 0.437
fkpA
FKBP-type peptidyl-prolyl cis-trans isomerase fkpA; PMID: 7540828 PMID: 8878048 best DB hits: BLAST: gb:AAK03433.1; (AE006173) SlyD [Pasteurella multocida]; E=9e-21 gb:AAC45696.1; (U92229) macrophage infectivity potentiator; E=5e-19 swissprot:P44760; FKBY_HAEIN PROBABLE FKBP-TYPE PEPTIDYL-PROLYL; E=1e-18 COG: HI0574; COG0545 FKBP-type peptidyl-prolyl cis-trans isomerases 1; E=9e-20 PFAM: PF00254; FKBP-type peptidyl-prolyl cis-trans; E=8.4e-32.
       0.413
RB5043
Conserved hypothetical protein-putative Na+/glutamate symporter; PMID: 8905231 best DB hits: BLAST: pir:S76683; hypothetical protein - Synechocystis sp. (strain PCC; E=7e-25 COG: slr0625; COG0786 Na+/glutamate symporter; E=7e-26.
  
    0.408
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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