STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB3322Similar to Cytochrome c; PMID: 2544196 best DB hits: BLAST: swissprot:P56205; CYC_ASPNG CYTOCHROME C ----- pir: A61490; E=0.005 pir:S41568; cytochrome c - Emericella nidulans; E=0.025 swissprot:P38091; CYC_EMENI CYTOCHROME C ----- gb: AAB50255.1; E=0.025 PFAM: PF00034; Cytochrome c; E=0.0014. (991 aa)    
Predicted Functional Partners:
RB3324
Hypothetical protein-signal peptide and transmembrane prediction; PMID: 12004073.
     0.964
RB1756
Hypothetical protein-transmembrane prediction.
  
     0.769
RB7871
Hypothetical protein-signal peptide and transmembrane prediction; PMID: 12004073.
 
     0.768
RB12544
Conserved hypothetical protein; Best DB hits: BLAST: gb:AAB69633.1; (U82513) random slug cDNA25 protein [Dictyostelium; E=0.012.
 
     0.764
RB7476
Hypothetical protein-signal peptide and transmembrane prediction.
  
     0.752
RB3951
Putative large multi-functional protein; Best DB hits: BLAST: pir:T36423; probable large, multifunctional secreted protein -; E=1e-59 embl:CAB45032.1; (AL078635) putative large multi-functional; E=4e-53.
  
     0.745
RB9438
Best DB hits: BLAST: pir:T36423; probable large, multifunctional secreted protein -; E=4e-50 embl:CAB45032.1; (AL078635) putative large multi-functional; E=6e-45.
  
     0.744
RB10138
Conserved hypothetical protein-putative membrane lipoprotein; Best DB hits: BLAST: pir:T34929; hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces; E=0.018.
  
     0.723
RB8789
Best DB hits: BLAST: pir:T35497; hypothetical protein SC6E10.10 - Streptomyces coelicolor; E=0.14 gb:AAG54838.1; AE005229_1 (AE005229) putative RTX family exoprotein; E=0.87.
  
     0.715
RB5616
Best DB hits: BLAST: pir:B69988; hypothetical protein ytaP - Bacillus subtilis -----; E=3e-15 ddbj:BAA81869.1; (AB026295) ESTs C19441(E10423),C99201(E10423); E=2e-08 pir:G82643; conserved hypothetical protein XF1745 [imported] -; E=0.12 PFAM: PF00969; Class II histocompatibility ant; E=0.17.
  
     0.710
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.