STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
idhProbable Myo-inositol 2-dehydrogenase; PMID: 1761221 PMID: 112095 best DB hits: BLAST: ddbj:BAA97119.1; (AB035122); E=9e-09 pir:S76068; hypothetical protein - Synechocystis sp. (strain PCC; E=3e-08 swissprot:P26935; MI2D_BACSU MYO-INOSITOL 2-DEHYDROGENASE -----; E=1e-07 COG: slr0338; COG0673 Predicted dehydrogenases and related proteins; E=3e-09 PFAM: PF01408; Oxidoreductase family, NAD-bin; E=6.7e-37. (384 aa)    
Predicted Functional Partners:
RB3342
Conserved hypothetical protein; Best DB hits: BLAST: gb:AAC14880.1; (AF060080) hypothetical protein [Chlorobium; E=8e-12 embl:CAA77139.1; (Y18353) hypothetical protein [Thermus; E=4e-09 pir:C75001; hypothetical protein PAB1341 - Pyrococcus abyssi (strain; E=4e-09 COG: PAB1341; COG2120 Uncharacterized proteins, LmbE homologs; E=4e-10 PFAM: PF02585; Uncharacterized LmbE-like protein, C; E=8.8e-12.
  
    0.775
RB3337
Hypothetical protein.
       0.773
RB3340
Glucosamine-6-phosphate isomerase 2; PMID: 8747459 best DB hits: BLAST: swissprot:O31458; YBFT_BACSU HYPOTHETICAL 27.3 KD PROTEIN IN; E=2e-44 swissprot:O35000; NAGB_BACSU GLUCOSAMINE-6-PHOSPHATE ISOMERASE; E=6e-43 swissprot:O97440; GNP2_GIALA GLUCOSAMINE-6-PHOSPHATE ISOMERASE 2; E=6e-41 COG: BS_ybfT; COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate; E=2e-45 PFAM: PF01182; Glucosamine-6-phosphate isome; E=3.7e-76.
  
    0.773
RB11728
Conserved hypothetical protein-putative tagatose 3-epimerase; PMID: 8905231 PMID: 10561547 best DB hits: BLAST: swissprot:P73599; YD04_SYNY3 HYPOTHETICAL 32.8 KDA PROTEIN SLL1304; E=1e-25 swissprot:O50580; DT3E_PSECI D-TAGATOSE 3-EPIMERASE -----; E=2e-25 swissprot:Q9WYP7; Y416_THEMA HYPOTHETICAL PROTEIN TM0416 -----; E=3e-14 COG: sll1304; COG1082 Predicted endonucleases; E=1e-26.
  
    0.652
RB1939
Probable oxidoreductase; PMID: 9353932 best DB hits: BLAST: ddbj:BAB05939.1; (AP001514) dehydrogenase [Bacillus halodurans]; E=2e-07 swissprot:P40332; YISS_BACSU HYPOTHETICAL 37.5 KD PROTEIN IN; E=6e-06 pir:B72359; lipopolysaccharide biosynthesis protein BplA -; E=1e-05 COG: BH2220; COG0673 Predicted dehydrogenases and related proteins; E=2e-08 PFAM: PF01408; Oxidoreductase family, NAD-bindi; E=5e-14.
  
     0.633
RB12038
Best DB hits: BLAST: ddbj:BAB04429.1; (AP001509) BH0710~unknown conserved protein; E=8e-91 pir:T34927; probable oxidoreductase - Streptomyces coelicolor; E=5e-84 embl:CAB88965.1; (AL353864) putative oxidoreductase; E=3e-46 COG: BH0710; COG0673 Predicted dehydrogenases and related proteins; E=7e-92 PFAM: PF01408; Oxidoreductase family, NAD-bin; E=7e-36 PF02894; Oxidoreductase family, C-termi; E=6.8e-06.
  
     0.629
RB3442
Probable dehydrogenase; PMID: 10086841 best DB hits: BLAST: ddbj:BAB05939.1; (AP001514) dehydrogenase [Bacillus halodurans]; E=1e-08 pir:B72359; lipopolysaccharide biosynthesis protein BplA -; E=2e-07 pir:D71201; hypothetical protein PH1881 - Pyrococcus horikoshii; E=5e-07 COG: BH2220; COG0673 Predicted dehydrogenases and related proteins; E=1e-09 PFAM: PF01408; Oxidoreductase family, NAD-bindi; E=1.2e-14.
  
     0.623
lolI
Probable IolI protein; PMID: 7952181 best DB hits: BLAST: swissprot:P42419; IOLI_BACSU IOLI PROTEIN ----- pir: A69646; E=3e-12 ddbj:BAB06034.1; (AP001515) myo-inositol catabolism [Bacillus; E=1e-08 pir:D83615; hypothetical protein PA0242 [imported] - Pseudomonas; E=1e-05 COG: BS_iolI; COG1082 Predicted endonucleases; E=3e-13.
  
    0.550
RB10503
Probable lipopolysaccharide biosynthesis protein BplA-putative NADH-dependent oxidoreductase; Best DB hits: BLAST: pir:B72359; lipopolysaccharide biosynthesis protein BplA -; E=7e-09 ddbj:BAB05939.1; (AP001514) dehydrogenase [Bacillus halodurans]; E=2e-07 gb:AAC23913.1; (AF039207) NADH-dependent dehydrogenase homolog; E=2e-06 COG: TM0585; COG0673 Predicted dehydrogenases and related proteins; E=7e-10 PFAM: PF01118; Semialdehyde dehydrogenase, NA; E=0.37 PF01408; Oxidoreductase family, NAD-bin; E=6e-09 PF02894; Oxidoreductase family, C-termi; E=0.52.
  
     0.533
RB5727
Probable oxidoreductase; Best DB hits: BLAST: gb:AAD41367.1; AF151698_4 (AF151698) putative oxidoreductase; E=9e-09 pir:H69216; 3-chlorobenzoate-3,4-dioxygenase dyhydrogenase related; E=1e-08 pir:T38428; hypothetical oxidoreductase - fission yeast; E=5e-08 COG: MTH875; COG0673 Predicted dehydrogenases and related proteins; E=9e-10 PFAM: PF01408; Oxidoreductase family, NAD-bindi; E=9.2e-22.
  
     0.511
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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