STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB3346Hypothetical protein-signal peptide and transmembrane prediction; Best DB hits: PFAM: PF02369; Bacterial Ig-like domain (group 1); E=0.48. (567 aa)    
Predicted Functional Partners:
RB3348
N-acylglucosamine 2-epimerase; PMID: 1723410 PMID: 1400260 best DB hits: BLAST: pir:S75649; renin-binding protein-related protein - Synechocystis; E=1e-68 pdb:1FP3; A Chain A, Crystal Structure Of N-Acyl-D-Glucosamine; E=4e-54 swissprot:P51607; RNBP_RAT N-ACYLGLUCOSAMINE 2-EPIMERASE (GLCNAC; E=2e-53 COG: slr1975; COG2942 N-acyl-D-glucosamine 2-epimerase; E=1e-69.
       0.526
RB3349
Conserved hypothetical protein-putative sodium:solute symporter; PMID: 8905231 best DB hits: BLAST: pir:S75887; hypothetical protein - Synechocystis sp. (strain PCC; E=4e-40 gb:AAF54633.1; (AE003691) CG6723 gene product [Drosophila; E=5e-32 swissprot:Q9XT77; SL56_RABIT SODIUM-DEPENDENT MULTIVITAMIN; E=6e-32 COG: sll1087; COG0591 Na+/proline, Na+/panthothenate symporters and; E=4e-41 RP571; COG0591 Na+/proline, Na+/panthothenate symporters and related; E=4e-13 BH2222; COG0591 Na+/proline, Na+/panthothenate symporters and; E=3e-12 PFAM: PF01344; Kelch motif; E=0.014 PF00474; Sodium:solut [...]
       0.526
nanA
Probable N-acetylneuraminate lyase; PMID: 8081752 PMID: 3909108 PMID: 10952301 best DB hits: BLAST: pir:E82157; probable N-acetylneuraminate lyase VC1776 [imported] -; E=2e-39 embl:CAC27797.1; (AJ271330) acylneuraminate lyase [Sus scrofa]; E=7e-36 gb:AAG18989.1; (AE004999) dihydrodipicolinate synthase; DapA; E=2e-18 COG: VC1776; COG0329 Dihydrodipicolinate synthetase/N-acetylneuraminate; E=2e-40 PFAM: PF00701; Dihydrodipicolinate synthetase famil; E=2.7e-23.
       0.526
RB3353
Sialidase [Precursor]; PMID: 1400240 PMID: 8591030 best DB hits: BLAST: swissprot:Q02834; NANH_MICVI SIALIDASE PRECURSOR (NEURAMINIDASE); E=3e-40 pdb:1EUR; Sialidase ----- pdb: 1EUS Sialidase Complexed; E=3e-40 pdb:1EUU; Sialidase Or Neuraminidase, Large 68kd Form -----; E=3e-40 PFAM: PF02012; BNR repeat; E=0.1.
       0.526
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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