STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB3403N-acetylgalactosamine 6-sulfatase (GALNS); PMID: 8020961 best DB hits: BLAST: ddbj:BAA04535.1; (D17629) N-acetylgalactosamine 6-sulfate; E=8e-37 pir:S07089; arylsulfatase (EC 3.1.6.1) - sea urchin (Lytechinus; E=3e-34 embl:CAA34667.1; (X16679) arylsulfatase [Hemicentrotus; E=3e-34 COG: aslA; COG3119 Arylsulfatase A and related enzymes; E=1e-16 PFAM: PF00884; Sulfatase; E=6.6e-42. (491 aa)    
Predicted Functional Partners:
RB3404
Hypothetical protein.
       0.592
RB11162
Hypothetical protein-transmembrane prediction.
  
     0.563
RB3405
Putative hydrolase; PMID: 8843436 PMID: 1850729 best DB hits: BLAST: embl:CAB61926.1; (AL133278) putative hydrolase [Streptomyces; E=1e-109 embl:CAB95281.1; (AL359779) putative hydrolase [Streptomyces; E=4e-58 pir:A39405; beta-galactosidase (EC 3.2.1.23) - Clostridium; E=3e-19 COG: BH2723; COG3250 Beta-galactosidase/beta-glucuronidase; E=1e-18 PFAM: PF02837; Glycosyl hydrolases family 2,; E=1.3e-05 PF00703; Glycosyl hydrolases family 2,; E=7.2e-13.
  
   0.547
RB3517
Hypothetical protein.
  
     0.436
RB8052
Conserved hypothetical protein; PMID: 98295987 best DB hits: BLAST: pir:G70979; hypothetical protein Rv3278c - Mycobacterium; E=0.59 PFAM: PF01944; Integral membrane protein DUF95; E=0.0077.
  
     0.421
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.