STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dcdDeoxycytidine triphosphate deaminase; Catalyzes the deamination of dCTP to dUTP. (198 aa)    
Predicted Functional Partners:
ndk
Nucleoside diphosphate kinase (NDK); Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
  
 
 0.926
pyrG
CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates.
  
 
 0.924
RB2978
Probable MutT-family protein; PMID: 8843436 best DB hits: BLAST: embl:CAC16440.1; (AL450165) putative MutT-family protein; E=2e-05 swissprot:P56380; AP4A_MOUSE BIS(5'-NUCLEOSYL)-TETRAPHOSPHATASE; E=5e-05 pir:F75532; MutTnudix family protein - Deinococcus radiodurans; E=3e-04 COG: DR0329; COG0494 NTP pyrophosphohydrolases including oxidative damage; E=3e-05 DR0004; COG0494 NTP pyrophosphohydrolases including oxidative; E=4e-05 DR0550; COG0494 NTP pyrophosphohydrolases including oxidative damage; E=1e-04 PFAM: PF00293; MutT-like domain; E=4.8e-17.
   
  0.908
RB3429
Hypothetical protein.
       0.658
coaD
Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.
   
    0.536
lon
Probable ATP-dependent protease La 1; PMID: 7961402 PMID: 8969504 PMID: 9384377 best DB hits: BLAST: pir:S76379; hypothetical protein - Synechocystis sp. (strain PCC; E=2e-05 swissprot:P37945; LON1_BACSU ATP-DEPENDENT PROTEASE LA 1 -----; E=8e-05 swissprot:O66605; LON_AQUAE ATP-DEPENDENT PROTEASE LA -----; E=1e-04 COG: sll0195; COG2802 Uncharacterized protein, similar to the N-terminal; E=2e-06 BS_lonA; COG0466 ATP-dependent Lon protease, bacterial type; E=8e-06 PFAM: PF02190; ATP-dependent protease La (LON); E=8.3e-08.
       0.496
RB3430
Conserved hypothetical protein; PMID: 11677609 best DB hits: BLAST: gb:AAC61875.1; (M59935) unknown [Aspergillus nidulans]; E=0.062 pir:T41414; probable receptor-associated protein - fission yeast; E=0.23; Belongs to the BI1 family.
       0.493
tmk
Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
     
 0.402
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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