STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB3450Hypothetical protein. (61 aa)    
Predicted Functional Partners:
RB3446
Peptidyl-prolyl cis-trans isomerase cyp2; PMID: 11859360 best DB hits: BLAST: swissprot:P87051; YDJ3_SCHPO PROBABLE PEPTIDYL-PROLYL CIS-TRANS; E=5e-16 pir:H82708; peptidyl-prolyl cis-trans isomerase XF1212 [imported] -; E=9e-16 pir:H69044; peptidylprolyl isomerase (EC 5.2.1.8) MTH1338; E=2e-14 COG: XF1212; COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) -; E=9e-17 PFAM: PF00160; Cyclophilin type peptidyl-proly; E=1.9e-05.
       0.773
RB3449
Hypothetical protein.
       0.773
ispF
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4-diphosphocytidyl-2- C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP).
       0.572
RB3442
Probable dehydrogenase; PMID: 10086841 best DB hits: BLAST: ddbj:BAB05939.1; (AP001514) dehydrogenase [Bacillus halodurans]; E=1e-08 pir:B72359; lipopolysaccharide biosynthesis protein BplA -; E=2e-07 pir:D71201; hypothetical protein PH1881 - Pyrococcus horikoshii; E=5e-07 COG: BH2220; COG0673 Predicted dehydrogenases and related proteins; E=1e-09 PFAM: PF01408; Oxidoreductase family, NAD-bindi; E=1.2e-14.
       0.481
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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