STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB348PMID: 2303452 best DB hits: BLAST: gb:AAF49287.1; (AE003522) CG7402 gene product [Drosophila; E=4e-41 gb:AAF30402.1; AF109924_1 (AF109924) sulfatase 1 precursor [Helix; E=2e-39 swissprot:P15848; ARSB_HUMAN ARYLSULFATASE B PRECURSOR (ASB); E=6e-38 COG: ydeN; COG3119 Arylsulfatase A and related enzymes; E=2e-36 PFAM: PF00884; Sulfatase; E=1.4e-48. (520 aa)    
Predicted Functional Partners:
RB347
Ferredoxin, 2Fe-2S; PMID: 791660310884354 best DB hits: BLAST: pir:S75307; ferredoxin [2Fe-2S] sll1584 [similarity] - Synechocystis; E=2e-29 swissprot:O66511; FER2_AQUAE FERREDOXIN, 2FE-2S (AAFD4) -----; E=3e-08 pdb:1F37; A Chain A, Structure Of A Thioredoxin-Like [2fe-2s]; E=3e-08 COG: sll1584; COG3411 Uncharacterized protein; E=2e-30 TM0010_1; COG1894 NADH:ubiquinone oxidoreductase, NADH-binding (51; E=8e-09 aq_108a; COG3411 Uncharacterized protein; E=8e-09.
       0.773
RB352
Arylsulfatase (A or B); PMID: 7910580 PMID: 2303452 best DB hits: BLAST: ddbj:BAA04535.1; (D17629) N-acetylgalactosamine 6-sulfate; E=2e-32 gb:AAB03341.1; (U62317) arylsulfatase A [Homo sapiens]; E=5e-32 gb:AAA51779.1; (M32373) arylsulfatase B precursor [Homo sapiens]; E=7e-32 COG: PA0183; COG3119 Arylsulfatase A and related enzymes; E=4e-21 PFAM: PF00884; Sulfatase; E=5.6e-75.
 
    
0.648
RB344
Probable xanthan lyase; PMID: 11157235 PMID: 10966413 best DB hits: BLAST: ddbj:BAB21059.1; (AB037178) xanthan lyase [Bacillus sp. GL1]; E=3e-13 gb:AAG24953.1; AF242413_1 (AF242413) XalA [Paenibacillus; E=2e-10 gb:AAG42262.1; AF318176_1 (AF318176) putative xanthan lyase XalB; E=0.050 PFAM: PF00070; Pyridine nucleotide-disulphide; E=0.00077.
       0.618
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.