STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbsBPMID: 6313683 PMID: 3011793 PMID: 1583688 PMID: 7982928 best DB hits: BLAST: pir:C72311; ribose ABC transporter, periplasmic ribose-binding; E=7e-89 pir:C82497; ribose ABC transporter, periplasmic D-ribose-binding; E=1e-48 pir:JGEBRT; D-ribose-binding protein - Salmonella typhimurium; E=1e-47 COG: TM0958; COG1879 Periplasmic sugar-binding proteins; E=6e-90 BH3727; COG1609 Transcriptional regulators; E=5e-11 yphF; COG1879 Periplasmic sugar-binding proteins; E=1e-10 PFAM: PF00532; Periplasmic binding proteins; E=0.0014 PF00534; Glycosyl transferases group 1; E=0.11 PF00532; Periplasmic b [...] (335 aa)    
Predicted Functional Partners:
rbsC-2
Ribose transport system permease protein rbsC; PMID: 7921236 PMID: 9384377 best DB hits: BLAST: pir:D72314; ribose ABC transporter, permease protein - Thermotoga; E=3e-57 pir:B69690; ribose ABC transporter (permease) rbsC - Bacillus; E=6e-41 pir:B82497; ribose ABC transporter, permease protein VCA0129; E=2e-40 COG: TM0955; COG1172 Ribose/xylose/arabinose/galactoside ABC-type; E=3e-58 rbsC; COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport; E=6e-35 TM0112; COG1172 Ribose/xylose/arabinose/galactoside ABC-type; E=9e-30 PFAM: PF02653; Branched-chain amino acid transp; E=3.8e-10.
 0.999
rbsC
Ribose transport system permease protein; PMID: 7921236 PMID: 9922273 best DB hits: BLAST: embl:CAB66286.1; (AL136519) bifunctional carbohydrate binding and; E=8e-26 swissprot:P36948; RBSC_BACSU RIBOSE TRANSPORT SYSTEM PERMEASE; E=1e-23 pir:S72834; hypothetical protein B1620_F2_68 - Mycobacterium leprae; E=2e-23 COG: BS_rbsC; COG1172 Ribose/xylose/arabinose/galactoside ABC-type; E=3e-23 yphD; COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport; E=3e-23 VCA0129; COG1172 Ribose/xylose/arabinose/galactoside ABC-type; E=3e-23.
 0.997
rbsA-2
Ribose ABC transporter, ATP-binding protein rbsA; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 0.997
rbsC-3
Ribose transport system permease protein RbsC; PMID: 7921236 best DB hits: BLAST: pir:H83402; membrane protein component of ABC ribose transporter; E=2e-51 gb:AAK02238.1; (AE006050) RbsC [Pasteurella multocida]; E=2e-24 swissprot:P44736; RBSC_HAEIN RIBOSE TRANSPORT SYSTEM PERMEASE; E=3e-24 COG: PA1948; COG1172 Ribose/xylose/arabinose/galactoside ABC-type; E=1e-52 rbsC; COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport; E=2e-20 TM0112; COG1172 Ribose/xylose/arabinose/galactoside ABC-type; E=5e-17 PFAM: PF02653; Branched-chain amino acid transp; E=0.58.
 0.997
rbsC-4
Ribose ABC transporter permease protein; PMID: 11337471 PMID: 7921236 best DB hits: BLAST: gb:AAK05734.1; AE006394_4 (AE006394) ribose ABC transporter; E=1e-16 pir:G72416; sugar ABC transporter, permease protein - Thermotoga; E=3e-16 pir:B69690; ribose ABC transporter (permease) rbsC - Bacillus; E=3e-16 COG: TM0112; COG1172 Ribose/xylose/arabinose/galactoside ABC-type; E=3e-17 rbsC; COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport; E=2e-14 VCA0129; COG1172 Ribose/xylose/arabinose/galactoside ABC-type; E=3e-14 PFAM: PF02653; Branched-chain amino acid transp; E=6e-09.
 0.997
rbsD
High affinity ribose transport protein rbsD; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose.
 
  
 0.982
rbsA-3
PMID: 3086314 best DB hits: BLAST: pir:G83402; ribose transport protein RbsA PA1947 [imported] -; E=1e-103 gb:AAK05735.1; AE006394_5 (AE006394) ribose ABC transporter ATP; E=3e-85 pir:E72314; ribose ABC transporter, ATP-binding protein - Thermotoga; E=4e-83 COG: PA1947; COG1129 ABC-type sugar (aldose) transport system, ATPase; E=1e-104 PFAM: PF00005; ABC transporter; E=4.5e-45.
 0.972
rbsA-4
Putative ATP-binding protein of ribose ABC transport system; PMID: 3011793 PMID: 3086314 best DB hits: BLAST: gb:AAG59288.1; AE005642_7 (AE005642) putative ATP-binding protein; E=8e-88 ddbj:BAB06041.1; (AP001515) sugar ABC transporter (ATP-binding; E=1e-86 ddbj:BAB07449.1; (AP001519) ribose ABC transporter (ATP-binding; E=2e-86 COG: BH2322; COG1129 ABC-type sugar (aldose) transport system, ATPase; E=1e-87 PFAM: PF00005; ABC transporter; E=2.1e-51.
 0.972
rbsA
PMID: 7921236 best DB hits: BLAST: swissprot:P36947; RBSA_BACSU RIBOSE TRANSPORT ATP-BINDING PROTEIN; E=4e-92 embl:CAB66285.1; (AL136519) ABC transporter protein, ATP binding; E=2e-90 gb:AAK05735.1; AE006394_5 (AE006394) ribose ABC transporter ATP; E=1e-89 COG: BS_rbsA; COG1129 ABC-type sugar (aldose) transport system, ATPase; E=4e-93 PFAM: PF02239; Cytochrome D1 heme domain; E=0.31 PF00005; ABC transporter; E=3e-50.
 
 0.970
RB3495
Conserved hypothetical protein; PMID: 10360571 best DB hits: BLAST: pir:F72314; hypothetical protein TM0957 - Thermotoga maritima; E=2e-09 gb:AAD37311.1; AF135170_2 (AF135170) unknown [Yersinia pestis]; E=0.22.
 
    0.938
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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