STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB3513Hypothetical protein-signal peptide and transmembrane prediction; PMID: 11259647 best DB hits: BLAST: pir:G72720; probable oligopeptide-binding protein oppA APE0304 -; E=0.73 PFAM: PF00028; Cadherin domain; E=0.14. (477 aa)    
Predicted Functional Partners:
RB3514
Hypothetical protein-signal peptide and transmembrane prediction; PMID: 11259647.
 
    
0.840
RB3495
Conserved hypothetical protein; PMID: 10360571 best DB hits: BLAST: pir:F72314; hypothetical protein TM0957 - Thermotoga maritima; E=2e-09 gb:AAD37311.1; AF135170_2 (AF135170) unknown [Yersinia pestis]; E=0.22.
  
     0.733
RB12556
Conserved hypothetical protein; PMID: 8843436 best DB hits: BLAST: embl:CAB56131.1; (AL117669) hypothetical protein [Streptomyces; E=1e-22 pir:T35709; hypothetical protein SC7H1.14 SC7H1.14 - Streptomyces; E=6e-16 pir:S13421; polymeric globin alpha - brine shrimp (fragment) -----; E=0.087.
  
 
   0.705
pel
Pectate lyase; PMID: 8955401 PMID: 9427544 best DB hits: BLAST: embl:CAA65785.1; (X97119) pectate lyase [Erwinia chrysanthemi]; E=5e-29 pir:JC6502; pectate lyase (EC 4.2.2.2) - Amycolata sp ----- gb:; E=0.026 gb:AAF23285.1; AC016661_10 (AC016661) putative pectate lyase; E=0.037.
 
     0.695
RB3509
Best DB hits: BLAST: pir:T34929; hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces; E=1e-06 embl:CAB94634.1; (AL359215) putative secreted glycosyl hydrolase; E=7e-04 pir:T35029; hypothetical protein SC4C6.21c - Streptomyces coelicolor; E=0.13.
 
     0.691
RB3639
Conserved hypothetical protein; PMID: 9384377 best DB hits: BLAST: pir:C69797; conserved hypothetical protein yesT - Bacillus subtilis; E=4e-27 gb:AAF25818.1; AF184175_1 (AF184175) cephalosporin C deacetylase; E=2e-23 pir:H69797; rhamnogalacturonan acetylesterase homolog yesY -; E=2e-22.
  
 
   0.611
RB3417
Pectate lyase; PMID: 10198006 best DB hits: BLAST: gb:AAD25394.1; (AF121904) pectate lyase [Azospirillum irakense]; E=7e-51 ddbj:BAA81752.1; (AB028877) pectate lyase E [Bacillus sp; E=3e-49 gb:AAG29353.1; AF279264_1 (AF279264) pectate lyase [Pseudomonas; E=2e-48.
  
     0.540
RB3517
Hypothetical protein.
       0.515
RB6658
Hypothetical protein-signal peptide and transmembrane prediction.
  
     0.506
RB6409
Conserved hypothetical protein; PMID: 8843436 best DB hits: BLAST: embl:CAB56131.1; (AL117669) hypothetical protein [Streptomyces; E=8e-21 pir:T35709; hypothetical protein SC7H1.14 SC7H1.14 - Streptomyces; E=9e-20.
  
 
   0.483
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.