STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB3542Hypothetical protein-signal peptide and transmembrane prediction; Best DB hits: PFAM: PF00114; Pilin (bacterial filament); E=0.038. (410 aa)    
Predicted Functional Partners:
RB2860
PMID: 10567266 best DB hits: BLAST: pir:C75477; probable fimbrial assembly protein PilM - Deinococcus; E=1e-19 gb:AAK00347.1; AF329876_3 (AF329876) putative membrane protein; E=1e-06 pir:S75816; membrane protein pilM - Synechocystis sp. (strain PCC; E=8e-06 COG: DR0770; COG0849 Predicted ATPases of the HSP70 class involved in; E=1e-20.
  
     0.665
RB8516
Similar to secretion protein; PMID: 10984043 best DB hits: BLAST: pir:D83024; probable secretion protein PA4974 [imported] -; E=0.28 pir:A82540; outer membrane export factor XF2586 [imported] - Xylella; E=0.31 pir:B83071; hypothetical protein PA4592 [imported] - Pseudomonas; E=0.45 PFAM: PF02321; Outer membrane efflux protein; E=8.2e-07.
  
     0.640
aprF
Similar to AprF-putative outer membrane efflux protein or secreted alkaline phosphatase; PMID: 11222613 best DB hits: BLAST: gb:AAF87592.1; AF286062_5 (AF286062) AprF [Pseudomonas; E=0.29 gb:AAF01330.1; (AF188365) outer membrane protein [Pseudomonas; E=0.64 PFAM: PF02321; Outer membrane efflux protein; E=2.3e-05.
  
     0.615
comQ
Similar to general secretory pathway protein D; PMID: 10419967 best DB hits: BLAST: gb:AAK00351.1; AF329876_7 (AF329876) putative outer membrane protein; E=2e-10 embl:CAA32520.1; (X14336) gene IV product [Bacteriophage I2-2]; E=2e-08 pir:D82816; fimbrial assembly protein XF0373 [imported] - Xylella; E=4e-05 COG: XF0373; COG1450 General secretory pathway protein D; E=3e-06 PFAM: PF00263; Bacterial type II and III secretion; E=5.3e-20; Belongs to the bacterial secretin family.
  
    0.568
RB3545
Hypothetical protein.
       0.566
gspK
Probable general secretion pathway protein K; PMID: 8407845 best DB hits: BLAST: gb:AAC70108.1; (AF074613) type II secretion protein [Escherichia; E=2e-06 swissprot:P34026; GSPK_XANCP GENERAL SECRETION PATHWAY PROTEIN K; E=5e-04 swissprot:P31706; GSPK_ERWCA GENERAL SECRETION PATHWAY PROTEIN K; E=0.002 COG: XF1523; COG3156 General secretion pathway protein K; E=2e-04.
  
   0.562
RB3539
Hypothetical protein.
       0.554
RB3534
Probable ASPIC; Best DB hits: BLAST: ddbj:BAA91540.1; (AK001182) unnamed protein product [Homo sapiens]; E=1e-05 embl:CAB98267.1; (AJ276171) ASPIC [Homo sapiens]; E=4e-05 embl:CAB98268.1; (AJ276171) ASPIC [Homo sapiens] -----embl:; E=4e-05.
       0.537
RB6977
UDP-N-acetylhexosamine pyrophosphorylase; PMID: 9603950 best DB hits: BLAST: gb:AAB31210.2; (S73498) AgX-1 antigen [Homo sapiens]; E=9e-64 swissprot:Q16222; UAP1_HUMAN UDP-N-ACETYLHEXOSAMINE; E=9e-64 gb:AAF52387.1; (AE003613) BcDNA:LD24639 gene product [Drosophila; E=1e-63 PFAM: PF01128; Uncharacterized protein family UPF00; E=0.091 PF01704; UTP--glucose-1-phosphate uridylyltra; E=3.5e-37.
  
     0.524
RB7603
Best DB hits: BLAST: pir:T23334; hypothetical protein K04H8.3 - Caenorhabditis elegans; E=0.53 PFAM: PF02321; Outer membrane efflux protein; E=0.0021.
  
     0.520
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.