STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB3559Hypothetical protein. (85 aa)    
Predicted Functional Partners:
RB3562
Hypothetical protein-transmembrane prediction.
       0.773
RB3564
Hypothetical protein-signal peptide and transmembrane prediction.
       0.773
RB3565
Hypothetical protein-signal peptide and transmembrane prediction.
       0.773
RB3566
Hypothetical protein.
       0.773
RB3567
Hypothetical protein.
       0.773
RB3557
Hypothetical protein-transmembrane prediction.
       0.664
gpi2
Glucosamine-6-phosphate isomerase 2; PMID: 3284790 best DB hits: BLAST: swissprot:O97440; GNP2_GIALA GLUCOSAMINE-6-PHOSPHATE ISOMERASE 2; E=1e-44 swissprot:O31458; YBFT_BACSU HYPOTHETICAL 27.3 KD PROTEIN IN; E=5e-44 swissprot:O35000; NAGB_BACSU GLUCOSAMINE-6-PHOSPHATE ISOMERASE; E=4e-43 COG: BS_ybfT; COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate; E=4e-45 DRA0063; COG2120 Uncharacterized proteins, LmbE homologs; E=0.002 PFAM: PF01182; Glucosamine-6-phosphate isome; E=2e-70 PF02585; Uncharacterized LmbE-like pro; E=3.6e-07.
       0.505
glcK-2
Probable glucokinase; PMID: 9620975 best DB hits: BLAST: pir:T44787; glucokinase (EC 2.7.1.2) [imported] - Bacillus; E=5e-14 swissprot:Q44406; XYLR_ANATH XYLOSE REPRESSOR ----- embl:; E=5e-13 gb:AAK06121.1; AE006432_3 (AE006432) glucose kinase (EC 2.7.1.2); E=6e-12 COG: BS_glcK; COG1940 Transcriptional regulators; E=6e-13 PFAM: PF00480; ROK family; E=3.2e-21.
       0.422
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.