STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB3585Hypothetical protein-transmembrane prediction. (219 aa)    
Predicted Functional Partners:
RB3584
Conserved hypothetical protein-putative sodium/hydrogen antiporter; PMID: 10952301 best DB hits: BLAST: pir:F82291; conserved hypothetical protein VC0689 [imported] -; E=4e-81 pir:G83177; probable sodiumhydrogen antiporter PA3739 [imported] -; E=3e-80 pir:S75742; hypothetical protein sll0556 - Synechocystis sp. (strain; E=1e-36 COG: VC0689_1; COG0025 NhaP-type Na+/H+ and K+/H+ antiporters; E=2e-58 PFAM: PF00999; Sodium/hydrogen exchanger fami; E=8.8e-35 PF00698; Acyl transferase domain; E=0.27 PF02254; KTN NAD-binding domain; E=0.0024.
       0.773
RB3583
Hypothetical protein.
       0.567
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.