STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB3650Hypothetical protein. (79 aa)    
Predicted Functional Partners:
RB3651
Hypothetical protein.
       0.773
RB3648
Best DB hits: BLAST: pir:T36464; probable oxidoreductase - Streptomyces coelicolor; E=3e-07 ddbj:BAB05884.1; (AP001514) BH2165~unknown conserved protein; E=6e-06 ddbj:BAB04206.1; (AP001508) BH0487~unknown conserved protein; E=3e-05 COG: BH2165; COG0673 Predicted dehydrogenases and related proteins; E=6e-07 PFAM: PF01408; Oxidoreductase family, NAD-bindi; E=6e-18.
       0.572
RB3647
Hypothetical protein.
       0.500
RB3653
Transcription regulator; PMID: 10952301 best DB hits: BLAST: pir:F82388; transcription regulator AraCXylS family VCA1001; E=3e-25 pir:C83237; probable transcription regulator PA3269 [imported] -; E=2e-24 embl:CAB88172.1; (AL352972) putative araC-family regulatory; E=1e-23 COG: VCA1001; COG2207 AraC-type DNA-binding domain-containing proteins; E=2e-26 PFAM: PF00165; Bacterial regulatory helix-turn-heli; E=3e-20.
       0.474
RB3654
Hypothetical protein.
       0.424
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.