STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB3670Probable transposase of IS981C; PMID: 2824781 best DB hits: BLAST: gb:AAK04755.1; AE006299_1 (AE006299) transposase of IS981C; E=1e-09 gb:AAK05346.1; AE006357_1 (AE006357) transposase of IS981G; E=1e-09 gb:AAK06124.1; AE006432_6 (AE006432) transposase of IS981J; E=1e-09 COG: PA0257; COG2801 Putative transposase; E=1e-07 yagA; COG1425 Predicted transposase; E=6e-05 HI1721; COG2801 Putative transposase; E=9e-05 PFAM: PF00665; Integrase core domain; E=2.5e-27. (153 aa)    
Predicted Functional Partners:
RB3672
Hypothetical protein.
       0.567
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.