STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB3675Hypothetical protein-signal peptide and transmembrane prediction; Best DB hits: BLAST: embl:CAA84826.1; (Z35768) ORF YBL007c [Saccharomyces cerevisiae]; E=0.22. (742 aa)    
Predicted Functional Partners:
RB3673
Hypothetical protein; Best DB hits: PFAM: PF00501; AMP-binding enzyme; E=0.031.
       0.572
apbE-2
Probable thiamin biosynthesis lipoprotein apbE; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.
       0.450
RB3680
Conserved hypothetical protein; PMID: 20437337 best DB hits: BLAST: pir:B83125; conserved hypothetical protein PA4169 [imported] -; E=5e-32 embl:CAB71827.1; (AL138662) hypothetical protein SC8E4A.22; E=2e-14 pir:D70063; hypothetical protein ywnA - Bacillus subtilis -----; E=8e-08 COG: PA4169; COG1959 Predicted transcriptional regulator; E=5e-33 PFAM: PF02082; Uncharacterized protein family UPF00; E=0.0035.
       0.450
RB3681
Conserved hypothetical protein; PMID: 10086842 best DB hits: BLAST: pir:T44299; hypothetical protein ycgJ [imported] - Bacillus; E=2e-25 ddbj:BAB04377.1; (AP001509) BH0658~unknown conserved protein; E=2e-25 pir:G83392; hypothetical protein PA2034 [imported] - Pseudomonas; E=1e-08 COG: BH0658; COG0500 SAM-dependent methyltransferases; E=2e-26 DR2405; COG2226 Methylase involved in ubiquinone/menaquinone; E=5e-04 PA3515; COG0500 SAM-dependent methyltransferases; E=0.002.
       0.450
RB3682
Hypothetical protein.
       0.440
RB3683
Hypothetical protein.
       0.440
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.