STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB3747Hypothetical protein. (76 aa)    
Predicted Functional Partners:
fliS
Similar to flagellar protein FliS; PMID: 10360571 best DB hits: BLAST: pir:F72286; flagellar protein FliS - Thermotoga maritima (strain; E=5e-05 COG: TM1179; COG1516 Flagellar protein; E=5e-06 PFAM: PF02561; Flagellar protein FliS; E=0.57.
       0.568
RB3751
UDP-glucose 4-epimerase homolog; PMID: 9174344 best DB hits: BLAST: gb:AAB84886.1; (AE000823) UDP-glucose 4-epimerase homolog; E=4e-65 pir:C69149; conserved hypothetical protein MTH380 - Methanobacterium; E=4e-65 gb:AAG18703.1; (AE004975) GDP-D-mannose dehydratase; Gmd; E=9e-61 COG: MTH380; COG0451 Nucleoside-diphosphate-sugar epimerases; E=4e-66 aq_1069; COG1087 UDP-glucose 4-epimerase; E=1e-26 PFAM: PF00106; short chain dehydrogenase; E=0.0021 PF01073; 3-beta hydroxysteroid dehydrogenase; E=1.3e-07 PF01370; NAD dependent epimerase/dehydratase; E=3.7e-88.
       0.489
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.