STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB3751UDP-glucose 4-epimerase homolog; PMID: 9174344 best DB hits: BLAST: gb:AAB84886.1; (AE000823) UDP-glucose 4-epimerase homolog; E=4e-65 pir:C69149; conserved hypothetical protein MTH380 - Methanobacterium; E=4e-65 gb:AAG18703.1; (AE004975) GDP-D-mannose dehydratase; Gmd; E=9e-61 COG: MTH380; COG0451 Nucleoside-diphosphate-sugar epimerases; E=4e-66 aq_1069; COG1087 UDP-glucose 4-epimerase; E=1e-26 PFAM: PF00106; short chain dehydrogenase; E=0.0021 PF01073; 3-beta hydroxysteroid dehydrogenase; E=1.3e-07 PF01370; NAD dependent epimerase/dehydratase; E=3.7e-88. (371 aa)    
Predicted Functional Partners:
fliS
Similar to flagellar protein FliS; PMID: 10360571 best DB hits: BLAST: pir:F72286; flagellar protein FliS - Thermotoga maritima (strain; E=5e-05 COG: TM1179; COG1516 Flagellar protein; E=5e-06 PFAM: PF02561; Flagellar protein FliS; E=0.57.
       0.658
RB8313
Putative glycosyl transferase (WbnE); PMID: 10531250 best DB hits: BLAST: gb:AAD50490.1; AF172324_8 (AF172324) WbnE [Escherichia coli]; E=7e-21 pir:C70036; capsular polysaccharide biosynthesis homolog yveN -; E=2e-19 pir:T35514; probable glycosyl transferase - Streptomyces coelicolor; E=2e-17 COG: BS_yveN; COG0438 Predicted glycosyltransferases; E=2e-20 PFAM: PF00534; Glycosyl transferases group 1; E=9.5e-43.
  
    0.620
RB10614
PMID: 11157937 PMID: 11481430 best DB hits: BLAST: swissprot:Q9R9N0; LPSD_RHIME LIPOPOLYSACCHARIDE CORE BIOSYNTHESIS; E=4e-17 swissprot:Q9R9N1; LPSE_RHIME LIPOPOLYSACCHARIDE CORE BIOSYNTHESIS; E=2e-16 ddbj:BAB07431.1; (AP001519) BH3712~unknown conserved protein; E=3e-14 COG: DR0713; COG0438 Predicted glycosyltransferases; E=3e-17 PFAM: PF00534; Glycosyl transferases group 1; E=1e-30.
  
    0.586
RB2474
Probable hexosyltransferase; PMID: 10360571 best DB hits: BLAST: pir:E72354; probable hexosyltransferase (EC 2.4.1.-) TM0622 -; E=3e-22 pir:C70036; capsular polysaccharide biosynthesis homolog yveN -; E=7e-12 pir:A82676; conserved hypothetical protein XF1470 [imported] -; E=2e-10 COG: TM0622; COG0438 Predicted glycosyltransferases; E=3e-23 PFAM: PF00534; Glycosyl transferases group 1; E=6.1e-38.
  
    0.562
amsG
UDP-galactose-lipid carrier transferase; PMID: 7596293 best DB hits: BLAST: swissprot:Q57491; Y872_HAEIN HYPOTHETICAL SUGAR TRANSFERASE HI0872; E=3e-56 swissprot:Q46628; AMSG_ERWAM UDP-GALACTOSE-LIPID CARRIER; E=5e-56 pir:S61891; undecaprenyl-phosphate galactosephosphotransferase (EC; E=5e-56 COG: HI0872; COG2148 Sugar transferases involved in lipopolysaccharide; E=2e-57 PFAM: PF00895; ATP synthase protein 8; E=0.37 PF02397; Bacterial sugar transferase; E=3.6e-89.
 
  
 0.537
RB5991
Best DB hits: BLAST: pir:G69146; capsular polysaccharide biosynthesis protein -; E=6e-16 swissprot:O05083; YG98_HAEIN PUTATIVE GLYCOSYL TRANSFERASE HI1698; E=9e-16 embl:CAA72352.1; (Y11648) wlaC [Campylobacter jejuni]; E=5e-15 COG: MTH362; COG0438 Predicted glycosyltransferases; E=5e-17 PFAM: PF00534; Glycosyl transferases group 1; E=1.8e-36.
  
    0.524
RB3755
Iduronate-2-sulfatase; PMID: 8244397 PMID: 8325651 best DB hits: BLAST: gb:AAA16877.1; (L13329) iduronate-2-sulfatase [Homo sapiens]; E=2e-42 gb:AAB33747.1; iduronate-2-sulfatase, IDS {EC 3.1.6.13} [human,; E=1e-41 gb:AAA59192.1; (L04586) iduronate 2-sulfatase [Homo sapiens]; E=2e-40 COG: PA2333; COG3119 Arylsulfatase A and related enzymes; E=6e-37 yejM; COG3083 Predicted hydrolase of alkaline phosphatase; E=9e-07 BS_yfnI; COG1368 Phosphoglycerol transferase and related proteins,; E=3e-06 PFAM: PF00884; Sulfatase; E=4.9e-29.
       0.497
RB3747
Hypothetical protein.
       0.489
RB2485
Probable hexosyltransferase; PMID: 10360571 best DB hits: BLAST: pir:E72354; probable hexosyltransferase (EC 2.4.1.-) TM0622 -; E=5e-20 swissprot:Q9R9N1; LPSE_RHIME LIPOPOLYSACCHARIDE CORE BIOSYNTHESIS; E=4e-10 swissprot:Q9R9N0; LPSD_RHIME LIPOPOLYSACCHARIDE CORE BIOSYNTHESIS; E=1e-09 COG: TM0622; COG0438 Predicted glycosyltransferases; E=4e-21 PFAM: PF00534; Glycosyl transferases group 1; E=1.1e-22.
  
    0.476
RB7146
Probable hexosyltransferase; PMID: 10360571 best DB hits: BLAST: pir:E72354; probable hexosyltransferase (EC 2.4.1.-) TM0622 -; E=2e-24 gb:AAD50490.1; AF172324_8 (AF172324) WbnE [Escherichia coli]; E=5e-19 pir:E70036; capsular polysaccharide biosynthesis homolog yveP -; E=1e-18 COG: TM0622; COG0438 Predicted glycosyltransferases; E=2e-25 PFAM: PF00534; Glycosyl transferases group 1; E=1.8e-41.
  
    0.459
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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