STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB3768Probable glucarate transporter; PMID: 10762278 PMID: 7704254 best DB hits: BLAST: swissprot:P42237; GUDP_BACSU PROBABLE GLUCARATE TRANSPORTER; E=2e-33 swissprot:Q46916; GUDP_ECOLI PROBABLE GLUCARATE TRANSPORTER; E=2e-33 gb:AAG57903.1; AE005507_4 (AE005507) putative transport protein; E=4e-33 COG: BS_ycbE; COG0477 Permeases of the major facilitator superfamily; E=2e-34 PA1569; COG2271 Sugar phosphate permease; E=7e-12 AF0907; COG0477 Permeases of the major facilitator superfamily; E=1e-11. (437 aa)    
Predicted Functional Partners:
RB3773
Conserved hypothetical protein; PMID: 8905231 best DB hits: BLAST: pir:S75596; hypothetical protein slr1342 - Synechocystis sp. (strain; E=2e-54 gb:AAF25989.1; AC013354_8 (AC013354) F15H18.21 [Arabidopsis; E=4e-54 gb:AAF78379.1; AC069551_12 (AC069551) T10O22.24 [Arabidopsis; E=1e-52 COG: slr1342; COG3395 Uncharacterized protein; E=2e-55.
 
     0.836
RB3771
Conserved hypothetical protein; PMID: 9371463 best DB hits: BLAST: pir:B69206; conserved hypothetical protein MTH796 - Methanobacterium; E=1e-16 pir:S75497; hypothetical protein slr2121 - Synechocystis sp. (strain; E=6e-16 pir:D75064; hypothetical protein PAB0997 - Pyrococcus abyssi (strain; E=3e-12 COG: MTH796; COG1878 Uncharacterized ACR, predicted metal-dependent; E=1e-17.
 
     0.833
RB3770
Probable NADH-dependent dyhydrogenase; PMID: 10484179 best DB hits: BLAST: ddbj:BAB04967.1; (AP001511) NADH-dependent dyhydrogenase; E=3e-19 swissprot:O05389; YRBE_BACSU HYPOTHETICAL 37.8 KDA PROTEIN IN; E=2e-17 pir:G72391; conserved hypothetical protein - Thermotoga maritima; E=9e-15 COG: BH1248; COG0673 Predicted dehydrogenases and related proteins; E=3e-20 PFAM: PF01408; Oxidoreductase family, NAD-bi; E=1.5e-26.
 
    0.811
RB3772
Hypothetical protein.
       0.773
RB3774
Conserved hypothetical protein; PMID: 10484179 best DB hits: BLAST: swissprot:P54540; YQJC_BACSU HYPOTHETICAL 15.7 KD PROTEIN IN; E=1e-15 ddbj:BAB05187.1; (AP001512) BH1468~unknown conserved protein; E=4e-15 pir:A71452; glyoxalase I related protein PH0272 [similarity] -; E=2e-13 COG: BS_yqjC; COG0346 Lactoylglutathione lyase; E=9e-17 PFAM: PF00903; Glyoxalase/Bleomycin resistance pr; E=3.7e-09.
 
  
 0.758
RB3775
Hypothetical protein-transmembrane prediction.
       0.692
leuB-2
3-isopropylmalate dehydrogenase; PMID: 3110742 best DB hits: BLAST: pir:D75045; 3-isopropylmalate dehydrogenase (leub) PAB2424 -; E=2e-52 swissprot:O66607; LEU3_AQUAE 3-ISOPROPYLMALATE DEHYDROGENASE; E=6e-51 swissprot:Q9WZ26; LEU3_THEMA 3-ISOPROPYLMALATE DEHYDROGENASE; E=2e-49 COG: PAB2424; COG0473 Isocitrate/isopropylmalate dehydrogenase; E=2e-53 PFAM: PF00180; Isocitrate and isopropylmalate dehyd; E=6.3e-108 PF02376; CUT domain; E=0.32.
     
 0.635
RB531
Iron (III) transport system (iron (III)-binding protein); PMID: 2404942 best DB hits: BLAST: pir:S75102; hypothetical protein sll0237 - Synechocystis sp. (strain; E=7e-43 ddbj:BAB04232.1; (AP001508) iron (III) transport system (iron; E=9e-24 ddbj:BAA75385.1; (AB013374) Yvfk [Bacillus halodurans]; E=2e-21 COG: sll0237; COG1840 ABC-type thiamine transport systems, periplasmic; E=6e-44 VC1424; COG0687 Spermidine/putrescine-binding periplasmic protein; E=7e-04 PFAM: PF01547; Bacterial extracellular solut; E=0.027.
  
  
 0.597
RB736
Conserved hypothetical protein-putative rhamnosidase; PMID: 10632887 best DB hits: BLAST: pir:T34929; hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces; E=1e-04 embl:CAB53341.1; (AJ238748) alfa-L-rhamnosidase [Clostridium; E=0.019.
  
     0.527
RB3777
Hypothetical protein-signal peptide and transmembrane prediction.
       0.498
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.