STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB3788ABC transporter, ATP-binding protein; PMID: 9767592 PMID: 10567266 best DB hits: BLAST: swissprot:P22040; Y415_SYNY3 HYPOTHETICAL ABC TRANSPORTER; E=3e-49 gb:AAC36155.1; (AF003632) PilH [Myxococcus xanthus]; E=2e-47 pir:H75288; ABC transporter, ATP-binding protein - Deinococcus; E=5e-47 COG: sll0415; COG1131 ABC-type multidrug transport system, ATPase; E=2e-50 BH1054_2; COG0842 Permease component of an ABC-transporter; E=1e-33 PH0820; COG1131 ABC-type multidrug transport system, ATPase; E=3e-33 PFAM: PF02223; Thymidylate kinase; E=0.7 PF00005; ABC transporter; E=1.1e-46. (358 aa)    
Predicted Functional Partners:
RB3786
Hypothetical protein-transmembrane prediction.
  
   0.855
RB3789
Hypothetical protein-transmembrane prediction.
       0.773
cysA-2
Sulfate transport ATP-binding protein CYSA; PMID: 90264334 PMID: 2188958 best DB hits: BLAST: swissprot:P16676; CYSA_ECOLI SULFATE TRANSPORT ATP-BINDING PROTEIN; E=2e-33 gb:AAG57540.1; AE005472_7 (AE005472) ATP-binding component of; E=2e-33 ddbj:BAA21795.1; (AB000100) malK-like protein [Synechococcus sp.]; E=7e-33 COG: cysA; COG1118 ABC-type sulfate/molybdate transport systems, ATPase; E=1e-34 NMB0879; COG1118 ABC-type sulfate/molybdate transport systems,; E=6e-33 VC0541; COG1118 ABC-type sulfate/molybdate transport systems, ATPase; E=8e-33 PFAM: PF00071; Ras family; E=0.11 PF00004; AT [...]
  
     0.721
cysA
Sulfate transport ATP-binding protein cysA; PMID: 2188958 best DB hits: BLAST: gb:AAF43869.1; AF166114_81 (AF166114) probable transport protein; E=3e-22 gb:AAG19353.1; (AE005030) spermidineputrescine ABC transporter; E=7e-22 pir:B81966; probable ABC transport ATP-binding protein NMA0485; E=7e-22 COG: VNG0921G; COG1130 ABC-type sugar/spermidine/putrescine transport; E=6e-23 NMB1966; COG1127 Uncharacterized ABC-type transport system, ATPase; E=9e-23 slr1455; COG1118 ABC-type sulfate/molybdate transport systems,; E=3e-22 PFAM: PF01078; Magnesium chelatase, subunit Chl; E=0.58 PF00005; ABC [...]
 
   
 0.695
RB3790
Hypothetical protein.
       0.567
RB8214
Conserved hypothetical protein-putative membrane bound transporter; Best DB hits: BLAST: pir:S76926; hypothetical protein - Synechocystis sp. (strain PCC; E=1e-06 gb:AAC36156.1; (AF003632) PilI [Myxococcus xanthus]; E=0.016 COG: sll1107; COG1277 Permease component of an ABC-transporter; E=9e-08.
  
   0.464
RB6500
Mycocerosate synthase; PMID: 3880746 best DB hits: BLAST: pir:S72705; mycocerosate synthase (EC 2.3.1.111) - Mycobacterium; E=0.0 pir:H70819; probable polyketide synthase - Mycobacterium tuberculosis; E=0.0 gb:AAF62883.1; AF217189_6 (AF217189) epoD [Sorangium cellulosum]; E=1e-180 COG: PA2402_3; COG1020 Non-ribosomal peptide synthetase modules and related; E=4e-99 BS_ppsD_3; COG1020 Non-ribosomal peptide synthetase modules and; E=4e-92 PA2424_2; COG1020 Non-ribosomal peptide synthetase modules and related; E=1e-91 PFAM: PF00108; Thiolase, N-terminal domain; E=2.7e-06 PF00109; Beta-keto [...]
  
 
 0.412
RB11975
Polyketide synthase; PMID: 10662695 PMID: 10649995 best DB hits: BLAST: gb:AAF26921.1; AF210843_18 (AF210843) polyketide synthase [Sorangium; E=0.0 gb:AAF26923.1; AF210843_20 (AF210843) polyketide synthase [Sorangium; E=0.0 gb:AAF62883.1; AF217189_6 (AF217189) epoD [Sorangium cellulosum]; E=0.0 COG: BS_fabD; COG0331 (acyl-carrier-protein) S-malonyltransferase; E=7e-31 PA2965; COG0304 3-oxoacyl-(acyl-carrier-protein) synthase I; E=3e-28 PA5234; COG0604 NADPH:quinone reductase and related Zn-dependent; E=2e-27 PFAM: PF00108; Thiolase, N-terminal domain; E=7.3e-07 PF00109; Beta-ketoacyl s [...]
  
 
 0.404
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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