STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB3808Hypothetical protein. (491 aa)    
Predicted Functional Partners:
RB3804
Hypothetical protein-signal peptide and transmembrane prediction.
 
     0.949
RB5326
Hypothetical protein.
  
     0.773
RB6100
Hypothetical protein-transmembrane prediction; Best DB hits: PFAM: PF02368; Bacterial Ig-like domain (group; E=0.091.
  
     0.772
RB7762
Probable xanthan lyase; PMID: 11157235 PMID: 10347025 PMID: 10966413 best DB hits: BLAST: ddbj:BAB21059.1; (AB037178) xanthan lyase [Bacillus sp. GL1]; E=5e-08 gb:AAG24953.1; AF242413_1 (AF242413) XalA [Paenibacillus; E=3e-07 gb:AAG42262.1; AF318176_1 (AF318176) putative xanthan lyase XalB; E=0.003.
  
     0.772
RB12097
Hypothetical protein-signal peptide prediction.
  
     0.769
RB2845
Hypothetical protein-transmembrane prediction.
  
     0.769
RB6511
Hypothetical protein.
  
     0.766
RB11276
Hypothetical protein-transmembrane region and signal peptide prediction.
  
     0.763
RB6796
Hypothetical protein.
  
     0.757
RB900
Hypothetical protein-signal peptide prediction.
  
     0.757
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.