STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arsA-2Arylsulfatase A; PMID: 7910580 PMID: 1572648 best DB hits: BLAST: ddbj:BAA04535.1; (D17629) N-acetylgalactosamine 6-sulfate; E=3e-38 embl:CAA36398.1; (X52150) arylsulphatase a [Homo sapiens]; E=3e-35 gb:AAB03341.1; (U62317) arylsulfatase A [Homo sapiens]; E=3e-35 COG: ydeN; COG3119 Arylsulfatase A and related enzymes; E=8e-29 PFAM: PF00884; Sulfatase; E=3.2e-49. (496 aa)    
Predicted Functional Partners:
RB3873
Hypothetical protein.
       0.554
RB3871
Probable transposase; PMID: 10762236 best DB hits: BLAST: gb:AAD38020.1; AF148127_1 (AF148127) transposase [Porphyromonas; E=8e-13 ddbj:BAA83477.1; (AB009361) transposase [Porphyromonas; E=1e-12 ddbj:BAA92234.1; (AB031551) transposase [Bacillus subtilis]; E=3e-10 COG: BH0691; COG3385 Predicted transposase; E=2e-10 PFAM: PF01609; Transposase (IS4 family); E=6.2e-08.
       0.466
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.