STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB3911Hypothetical protein. (213 aa)    
Predicted Functional Partners:
RB3913
Collagenase; PMID: 1317840 best DB hits: BLAST: pir:C75313; probable proteinase - Deinococcus radiodurans (strain; E=1e-136 pir:D69102; collagenase - Methanobacterium thermoautotrophicum; E=2e-58 pir:F64895; hypothetical protein b1435 - Escherichia coli -----; E=9e-53 COG: DR2130; COG0826 Protease related to collagenase; E=1e-137 PFAM: PF01045; EIAV glycoprotein, gp45; E=0.52 PF01136; Peptidase family U32; E=1.9e-50 PF00452; Apoptosis regulator proteins, B; E=0.0056.
       0.543
RB3908
Conserved hypothetical protein; PMID: 10567266 best DB hits: BLAST: pir:C75256; conserved hypothetical protein - Deinococcus radiodurans; E=3e-46 gb:AAG48795.1; AF332432_1 (AF332432) unknown protein [Arabidopsis; E=3e-40 pir:A82330; conserved hypothetical protein VC0373 [imported] -; E=4e-38 COG: DR2598; COG0432 Uncharacterized ACR; E=3e-47 PFAM: PF01894; Uncharacterised protein family UPF00; E=5.6e-43.
       0.421
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.