STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB3913Collagenase; PMID: 1317840 best DB hits: BLAST: pir:C75313; probable proteinase - Deinococcus radiodurans (strain; E=1e-136 pir:D69102; collagenase - Methanobacterium thermoautotrophicum; E=2e-58 pir:F64895; hypothetical protein b1435 - Escherichia coli -----; E=9e-53 COG: DR2130; COG0826 Protease related to collagenase; E=1e-137 PFAM: PF01045; EIAV glycoprotein, gp45; E=0.52 PF01136; Peptidase family U32; E=1.9e-50 PF00452; Apoptosis regulator proteins, B; E=0.0056. (900 aa)    
Predicted Functional Partners:
RB1958
Conserved hypothetical protein; PMID: 8843436 best DB hits: BLAST: embl:CAB59500.1; (AL132648) hypothetical protein SCI41.30c; E=5e-16 pir:C70512; hypothetical protein Rv2112c - Mycobacterium; E=1e-13 gb:AAC45734.1; (U26422) ORF6(2); similar to ORF6(1) of; E=3e-13.
  
  
 0.819
bioD
Dethiobiotin synthetase; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring.
   
  
 0.683
RB3911
Hypothetical protein.
       0.543
RB6221
Hypothetical protein-signal peptide and transmembrane prediction; PMID: 11759840.
  
     0.430
RB7502
Hypothetical protein; PMID: 11932238.
  
     0.426
RB6337
PMID: 10567266 best DB hits: BLAST: pir:H75377; conserved hypothetical protein - Deinococcus radiodurans; E=1e-11 pir:S76965; hypothetical protein - Synechocystis sp. (strain PCC; E=2e-08.
  
     0.425
RB4960
Conserved hypothetical protein; Best DB hits: BLAST: ddbj:BAB07003.1; (AP001518) BH3284~unknown conserved protein; E=2e-51 pir:D69999; conserved hypothetical protein ytqA - Bacillus subtilis; E=3e-48 gb:AAK06364.1; AE006455_10 (AE006455) HYPOTHETICAL PROTEIN; E=1e-46 COG: BH3284; COG1242 Uncharacterized FeS oxidoreductases; E=2e-52 MJ1136; COG1243 ELP3 component of the RNA polymerase II complex,; E=2e-07 BS_hemN; COG0635 Coproporphyrinogen III oxidase and related FeS; E=2e-05.
 
    0.411
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.