STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tolQ-2Probable tolQ protein; PMID: 8331075 PMID: 10348868 PMID: 8921895 best DB hits: BLAST: pir:G83274; probable tolQ-type transport protein PA2983 [imported] -; E=7e-13 pir:H71686; tolQ protein (tolQ) RP309 - Rickettsia prowazekii; E=1e-10 pir:G82187; biopolymer transport protein ExbB-related protein VC1547; E=1e-10 COG: PA2983; COG0811 Biopolymer transport proteins; E=7e-14 PFAM: PF01618; MotA/TolQ/ExbB proton channel famil; E=4e-28. (257 aa)    
Predicted Functional Partners:
RB3933
Hypothetical protein-transmembrane prediction; PMID: 11743194 best DB hits: BLAST: swissprot:P18784; EXBD_ECOLI BIOPOLYMER TRANSPORT EXBD PROTEIN; E=0.010 swissprot:Q05606; EXBD_PSEPU BIOPOLYMER TRANSPORT EXBD PROTEIN; E=0.35 embl:CAB50919.1; (AJ243354) hypothetical protein [Pseudomonas; E=0.35 COG: exbD; COG0848 Biopolymer transport protein; E=0.001.
  
   0.892
RB3934
Hypothetical protein-transmembrane prediction; Best DB hits: BLAST: swissprot:Q9ZHV9; EXD2_VIBCH BIOPOLYMER TRANSPORT EXBD2 PROTEIN; E=0.57 PFAM: PF02472; Biopolymer transport protein ExbD/To; E=0.0017.
  
   0.892
exbD-2
Probable biopolymer transport ExbD protein; PMID: 2670903 PMID: 10517598 best DB hits: BLAST: gb:AAC78852.1; (AF087669) ExbD [Bordetella bronchiseptica]; E=1e-06 pir:T44783; exbD protein [imported] - Bordetella pertussis -----; E=3e-06 pir:A71687; tolR protein (tolR) RP310 - Rickettsia prowazekii; E=3e-06 COG: RP310; COG0848 Biopolymer transport protein; E=4e-07 PFAM: PF02472; Biopolymer transport protein ExbD/To; E=4.1e-10.
 
 
 0.890
exbD
Probable biopolymer transport exbD protein; PMID: 9140974 best DB hits: BLAST: embl:CAB50919.1; (AJ243354) hypothetical protein [Pseudomonas; E=4e-05 pir:F83274; conserved hypothetical protein PA2982 [imported] -; E=7e-05 swissprot:O06434; EXBD_NEIGO BIOPOLYMER TRANSPORT EXBD PROTEIN; E=0.001 COG: PA2982; COG0848 Biopolymer transport protein; E=7e-06 PFAM: PF02472; Biopolymer transport protein ExbD/; E=8.9e-08.
 
 
 0.802
RB12053
PMID: 10984043 PMID: 1644779 PMID: 2670903 best DB hits: BLAST: pir:F83274; conserved hypothetical protein PA2982 [imported] -; E=3e-04 embl:CAB50919.1; (AJ243354) hypothetical protein [Pseudomonas; E=7e-04 pir:S74451; hypothetical protein sll1405 - Synechocystis sp. (strain; E=0.001 COG: PA2982; COG0848 Biopolymer transport protein; E=3e-05 PFAM: PF02472; Biopolymer transport protein ExbD/To; E=1.6e-12.
 
   0.800
RB5152
ABC transporter, ATP-binding protein; PMID: 2229036 best DB hits: BLAST: swissprot:P33982; YHBG_AZOCA PROBABLE ABC TRANSPORTER ATP-BINDING; E=2e-66 gb:AAA80299.1; (U23471) ABC-type permease homolog [Rhizobium; E=1e-64 swissprot:P25885; YHBG_RHIME PROBABLE ABC TRANSPORTER ATP-BINDING; E=7e-63 COG: DR2134; COG1137 ABC-type (unclassified) transport system, ATPase; E=2e-61 PA1071; COG0411 High-affinity branched-chain amino acid transport; E=1e-37 MTH1370; COG1131 ABC-type multidrug transport system, ATPase; E=3e-35 PFAM: PF00005; ABC transporter; E=3.8e-59.
  
   
 0.758
outD
General secretion pathway protein D (outD); PMID: 8326859 best DB hits: BLAST: pir:S32858; outD protein - Erwinia carotovora ----- embl:; E=2e-25 swissprot:P31701; GSPD_ERWCA GENERAL SECRETION PATHWAY PROTEIN D; E=2e-25 gb:AAA58785.1; (L33796) EpsD [Vibrio cholerae]; E=1e-22 COG: hofQ; COG1450 General secretory pathway protein D; E=4e-23 PFAM: PF00263; Bacterial type II and III secretion; E=1e-45.
  
    0.733
outD-2
Conserved hypothetical protein-putative protein transporter; PMID: 10360571 best DB hits: BLAST: pir:B72292; hypothetical protein TM1117 - Thermotoga maritima; E=4e-24 pir:C83561; probable type II secretion system protein PA0685; E=8e-22 pir:S32858; outD protein - Erwinia carotovora ----- embl:; E=1e-18 COG: TM1117; COG1450 General secretory pathway protein D; E=4e-25 PFAM: PF00263; Bacterial type II and III secr; E=1.7e-25.
  
    0.731
lpxB
lipid-A-disaccharide synthetase; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
  
     0.723
lpxA
acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
  
   
 0.722
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.