STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB3944Conserved hypothetical protein; Best DB hits: BLAST: embl:CAB94634.1; (AL359215) putative secreted glycosyl hydrolase; E=9e-10 pir:T34929; hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces; E=5e-08 embl:CAB45032.1; (AL078635) putative large multi-functional; E=0.001. (513 aa)    
Predicted Functional Partners:
RB569
Conserved hypothetical protein-putative secreted protein; PMID: 8843436 best DB hits: BLAST: pir:T34929; hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces; E=2e-08 embl:CAB94634.1; (AL359215) putative secreted glycosyl hydrolase; E=3e-07 embl:CAB45032.1; (AL078635) putative large multi-functional; E=8e-05.
  
     0.756
RB3648
Best DB hits: BLAST: pir:T36464; probable oxidoreductase - Streptomyces coelicolor; E=3e-07 ddbj:BAB05884.1; (AP001514) BH2165~unknown conserved protein; E=6e-06 ddbj:BAB04206.1; (AP001508) BH0487~unknown conserved protein; E=3e-05 COG: BH2165; COG0673 Predicted dehydrogenases and related proteins; E=6e-07 PFAM: PF01408; Oxidoreductase family, NAD-bindi; E=6e-18.
  
     0.732
RB774
PMID: 8843436 best DB hits: BLAST: embl:CAB45032.1; (AL078635) putative large multi-functional; E=7e-23 embl:CAB58265.1; (AL121849) putative multi-domain protein; E=5e-21 pir:T36423; probable large, multifunctional secreted protein -; E=0.048.
  
     0.722
RB9849
Best DB hits: BLAST: pir:T34929; hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces; E=3e-04.
  
     0.719
strI
PMID: 1654502 best DB hits: BLAST: swissprot:P09400; STRI_STRGR STREPTOMYCIN BIOSYNTHESIS PROTEIN; E=7e-09 ddbj:BAB05939.1; (AP001514) dehydrogenase [Bacillus halodurans]; E=5e-06 swissprot:P40332; YISS_BACSU HYPOTHETICAL 37.5 KD PROTEIN IN; E=0.014 COG: BH2220; COG0673 Predicted dehydrogenases and related proteins; E=4e-07 PFAM: PF01408; Oxidoreductase family, NAD-bindi; E=1.4e-05.
  
     0.713
RB12084
Hypothetical protein.
  
     0.711
RB10138
Conserved hypothetical protein-putative membrane lipoprotein; Best DB hits: BLAST: pir:T34929; hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces; E=0.018.
  
     0.707
RB6615
Probable secreted glycosyl hydrolase; PMID: 8843436 best DB hits: BLAST: embl:CAB94634.1; (AL359215) putative secreted glycosyl hydrolase; E=1e-12 pir:T34929; hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces; E=3e-11 pir:T35028; probable glycosyl hydrolase - Streptomyces coelicolor; E=0.054.
  
     0.706
RB4619
Probable NADH-dependent dehydrogenase; Best DB hits: BLAST: embl:CAB82869.1; (AJ276673) hypothetical protein [Streptomyces; E=8e-08 ddbj:BAB04967.1; (AP001511) NADH-dependent dyhydrogenase; E=1e-07 gb:AAC23913.1; (AF039207) NADH-dependent dehydrogenase homolog; E=5e-07 COG: BH1248; COG0673 Predicted dehydrogenases and related proteins; E=1e-08 PFAM: PF01408; Oxidoreductase family, NAD-bin; E=9.6e-18 PF02894; Oxidoreductase family, C-termi; E=0.086.
  
     0.697
RB1555
Probable NADH-dependent dehydrogenase; PMID: 10484179 best DB hits: BLAST: gb:AAC23913.1; (AF039207) NADH-dependent dehydrogenase homolog; E=1e-09 ddbj:BAB04967.1; (AP001511) NADH-dependent dyhydrogenase; E=1e-08 swissprot:Q54728; YJHC_STRPN HYPOTHETICAL PROTEIN IN NANB 3'REGION; E=3e-07 COG: BH1248; COG0673 Predicted dehydrogenases and related proteins; E=9e-10 PFAM: PF01408; Oxidoreductase family, NAD-bindi; E=3.2e-12.
  
     0.695
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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