STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB3951Putative large multi-functional protein; Best DB hits: BLAST: pir:T36423; probable large, multifunctional secreted protein -; E=1e-59 embl:CAB45032.1; (AL078635) putative large multi-functional; E=4e-53. (527 aa)    
Predicted Functional Partners:
RB3953
PMID: 9923682 best DB hits: BLAST: pir:B71970; cytochrome oxidase (cbb3-type) - Helicobacter pylori; E=2e-04 pir:C64538; cytochrome-c oxidase (EC 1.9.3.1) chain fixP -; E=0.003 ddbj:BAA33529.1; (AB018105) cb-type cytochrome c oxidase subunit; E=0.009 COG: jhp0135; COG2010 Cytochrome c, mono- and diheme variants; E=2e-05 PFAM: PF00034; Cytochrome c; E=0.00073.
 
     0.940
RB1109
Putative multi-domain protein; PMID: 8843436 best DB hits: BLAST: embl:CAB58265.1; (AL121849) putative multi-domain protein; E=2e-24 embl:CAB45032.1; (AL078635) putative large multi-functional; E=3e-24 pir:T36423; probable large, multifunctional secreted protein -; E=0.003.
 
     0.920
RB774
PMID: 8843436 best DB hits: BLAST: embl:CAB45032.1; (AL078635) putative large multi-functional; E=7e-23 embl:CAB58265.1; (AL121849) putative multi-domain protein; E=5e-21 pir:T36423; probable large, multifunctional secreted protein -; E=0.048.
 
     0.920
RB5644
Probable secreted glycosyl hydrolase; PMID: 8843436 best DB hits: BLAST: pir:T34929; hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces; E=6e-04 embl:CAB94634.1; (AL359215) putative secreted glycosyl hydrolase; E=7e-04 embl:CAB45032.1; (AL078635) putative large multi-functional; E=0.055.
 
     0.860
arsA-3
Probable arylsulfatase A; PMID: 2303452 best DB hits: BLAST: pir:F70837; probable sulfatase (EC 3.1.6.-) atsG - Mycobacterium; E=8e-35 gb:AAF55607.1; (AE003724) CG14291 gene product [Drosophila; E=9e-27 prf:2204388A; sulphamidase [Homo sapiens]; E=3e-25 COG: Rv0296c; COG3119 Arylsulfatase A and related enzymes; E=8e-36 PA0924; COG3083 Predicted hydrolase of alkaline phosphatase; E=3e-05 Rv0711; COG3119 Arylsulfatase A and related enzymes; E=5e-04 PFAM: PF00884; Sulfatase; E=2.8e-22.
       0.773
RB4621
Hypothetical protein-signal peptide prediction; Best DB hits: PFAM: PF00034; Cytochrome c; E=0.003.
  
     0.766
gdhP
Similar to glucose dehydrogenase-B [pyrroloquinoline-quinone] [Precursor]; PMID: 2671663 best DB hits: BLAST: swissprot:P13650; DHGB_ACICA GLUCOSE DEHYDROGENASE-B; E=0.12 pdb:1CRU; B Chain B, Soluble Quinoprotein Glucose Dehydrogenase; E=0.12 pir:C69050; phycocyanin alpha phycocyanobilin lyase CpcE -; E=0.19.
  
     0.759
RB5806
Hypothetical protein-transmembrane prediction; Best DB hits: PFAM: PF01436; NHL repeat; E=0.0032 PF00034; Cytochrome c; E=1.1e-06.
  
     0.753
RB6964
Probable L-sorbosone dehydrogenase; PMID: 7574579 best DB hits: BLAST: swissprot:Q44091; SNDH_ACELI L-SORBOSONE DEHYDROGENASE (SNDH); E=0.001 PFAM: PF00034; Cytochrome c; E=0.11.
  
     0.747
RB7418
Hypothetical protein-putative transmembrane protein; Best DB hits: PFAM: PF01433; Peptidase family M1; E=0.23 PF01542; Hepatitis C virus core protei; E=0.54 PF00034; Cytochrome c; E=0.002.
  
     0.747
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.