STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB4014Probable acetyl xylan esterase; PMID: 10846217 best DB hits: BLAST: embl:CAB55348.1; (AJ238716) acetyl xylan esterase [Ruminococcus; E=5e-07. (473 aa)    
Predicted Functional Partners:
hrpB
ATP-dependent helicase; PMID: 10322435 PMID: 9862990 best DB hits: BLAST: pir:B83150; probable ATP-dependent helicase PA3961 [imported] -; E=1e-113 gb:AAC45544.1; (U49051) HelO [Sinorhizobium meliloti]; E=1e-110 pir:E82708; ATP-dependent helicase XF1229 [imported] - Xylella; E=1e-107 COG: PA3961; COG1643 HrpA-like helicases; E=1e-114 PFAM: PF00270; DEAD/DEAH box helicase; E=0.19 PF00271; Helicase conserved C-terminal; E=3.7e-12.
       0.773
RB4015
Hypothetical protein-signal peptide prediction; Best DB hits: PFAM: PF00054; Laminin G domain; E=0.012.
       0.773
RB6858
Hypothetical oxidoreductase; PMID: 8759848 best DB hits: BLAST: swissprot:Q54728; YJHC_STRPN HYPOTHETICAL PROTEIN IN NANB 3'REGION; E=1e-04 pir:A83617; probable oxidoreductase PA0237 [imported] - Pseudomonas; E=0.033 pir:S56505; hypothetical 41.9K protein (leuX-fecE intergenic region); E=0.094 COG: PA0237; COG0673 Predicted dehydrogenases and related proteins; E=0.003 PFAM: PF01408; Oxidoreductase family, NAD-bindi; E=2.6e-05.
  
     0.710
RB4008
Best DB hits: BLAST: embl:CAB45032.1; (AL078635) putative large multi-functional protein; E=1e-22 pir:T36423; probable large, multifunctional secreted protein -; E=4e-18 PFAM: PF00034; Cytochrome c; E=0.24 PF01436; NHL repeat; E=0.25.
 
     0.704
RB11948
Probable secreted protein-putative xanthan lyase related; PMID: 97000351 best DB hits: BLAST: ddbj:BAB21059.1; (AB037178) xanthan lyase [Bacillus sp. GL1]; E=2e-08 embl:CAB62685.1; (AL133422) putative membrane protein; E=3e-08 embl:CAB62757.1; (AL133424) putative secreted protein; E=8e-08 PFAM: PF00070; Pyridine nucleotide-disulphide; E=0.00038.
  
     0.699
RB3006
Probable sialidase; PMID: 1400240 PMID: 8591030 best DB hits: BLAST: pir:A49227; sialidase - Actinomyces viscosus ----- gb:; E=1e-06 pir:S20590; exo-alpha-sialidase (EC 3.2.1.18) - Actinomyces viscosus; E=2e-06 swissprot:Q02834; NANH_MICVI SIALIDASE PRECURSOR (NEURAMINIDASE); E=3e-05 PFAM: PF02012; BNR repeat; E=0.098.
 
   
 0.684
RB344
Probable xanthan lyase; PMID: 11157235 PMID: 10966413 best DB hits: BLAST: ddbj:BAB21059.1; (AB037178) xanthan lyase [Bacillus sp. GL1]; E=3e-13 gb:AAG24953.1; AF242413_1 (AF242413) XalA [Paenibacillus; E=2e-10 gb:AAG42262.1; AF318176_1 (AF318176) putative xanthan lyase XalB; E=0.050 PFAM: PF00070; Pyridine nucleotide-disulphide; E=0.00077.
  
     0.668
RB5300
Hypothetical protein-signal peptide and transmembrane prediction.
  
     0.664
RB4011
Hypothetical protein-transmembrane prediction; PMID: 12093901 best DB hits: BLAST: ddbj:BAB05241.1; (AP001512) thioredoxin (thiol:disulfide; E=0.019 ddbj:BAB05296.1; (AP001512) cytochrome c biogenesis (thioredoxin); E=0.12 pir:E69891; cytochrome c biogenesis protein CycX homolog homolog; E=0.15 COG: BH1522; COG0526 Thiol-disulfide isomerase and thioredoxins; E=0.002.
       0.651
RB6615
Probable secreted glycosyl hydrolase; PMID: 8843436 best DB hits: BLAST: embl:CAB94634.1; (AL359215) putative secreted glycosyl hydrolase; E=1e-12 pir:T34929; hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces; E=3e-11 pir:T35028; probable glycosyl hydrolase - Streptomyces coelicolor; E=0.054.
  
     0.620
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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