STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB4023Hypothetical protein. (55 aa)    
Predicted Functional Partners:
RB4021
Hypothetical protein-signal peptide and transmembrane prediction.
       0.773
estB
Probable esterase; PMID: 8190066 best DB hits: BLAST: pir:S43880; esterase - Spirulina platensis ----- gb:; E=2e-09 pir:S75304; serine esterase - Synechocystis sp. (strain PCC 6803); E=1e-06 pir:F81704; serine esterase, probable TC0413 [imported] - Chlamydia; E=0.002 COG: sll1284; COG0400 Predicted esterase; E=1e-07 PFAM: PF02230; Phospholipase/Carboxylesterase; E=0.27.
       0.773
RB4024
Probable endo-1,4-beta-xylanase Z [precursor]; PMID: 3139632 PMID: 7664125 best DB hits: BLAST: pir:S58235; endo-1,4-beta-xylanase (EC 3.2.1.8) 1 precursor -; E=1e-11 swissprot:P10478; XYNZ_CLOTM ENDO-1,4-BETA-XYLANASE Z PRECURSOR; E=1e-10 embl:CAB93667.1; (AJ272430) endoxylanase [Ruminococcus; E=1e-09 COG: yieL; COG2382 Enterochelin esterase and related enzymes; E=4e-05 DR0779_2; COG2819 Predicted hydrolase of the alpha/beta superfamily; E=0.001.
       0.773
RB4026
Hypothetical protein.
       0.479
atsG-2
Probable sulfatase; PMID: 10950929 best DB hits: BLAST: pir:F70837; probable sulfatase (EC 3.1.6.-) atsG - Mycobacterium; E=3e-26 gb:AAG17207.1; AF217204_1 (AF217204) heparan sulfate sulfamidase; E=2e-20 gb:AAF55607.1; (AE003724) CG14291 gene product [Drosophila; E=5e-20 COG: Rv0296c; COG3119 Arylsulfatase A and related enzymes; E=3e-27 PA0924; COG3083 Predicted hydrolase of alkaline phosphatase; E=7e-05 Rv3299c; COG3119 Arylsulfatase A and related enzymes; E=7e-05 PFAM: PF00884; Sulfatase; E=2.5e-24.
       0.468
RB4029
Conserved hypothetical protein; PMID: 10952301 best DB hits: BLAST: pir:F82453; conserved hypothetical protein VCA0489 [imported] -; E=5e-06 pir:F82462; conserved hypothetical protein VCA0423 [imported] -; E=0.002.
       0.430
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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