STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB4071Best DB hits: BLAST: pir:H83105; conserved hypothetical protein PA4319 [imported] -; E=3e-16 pir:S75694; hypothetical protein slr1478 - Synechocystis sp. (strain; E=2e-09 ddbj:BAB04452.1; (AP001509) BH0733~unknown conserved protein in; E=3e-05 COG: PA4319; COG1300 Uncharacterized membrane protein; E=2e-17 PFAM: PF01944; Integral membrane protein DUF95; E=0.69. (369 aa)    
Predicted Functional Partners:
RB9826
Best DB hits: BLAST: pir:G83105; hypothetical protein PA4318 [imported] - Pseudomonas; E=2e-12 ddbj:BAB04453.1; (AP001509) BH0734~unknown conserved protein; E=3e-04 pir:S74573; hypothetical protein slr0254 - Synechocystis sp. (strain; E=4e-04 COG: PA4318; COG1714 Uncharacterized membrane protein/domain; E=2e-13.
 
    0.832
RB4073
Hypothetical protein-transmembrane region and signal peptide prediction.
       0.806
RB8651
Best DB hits: BLAST: pir:S75346; hypothetical protein slr2013 - Synechocystis sp. (strain; E=2e-34 pir:D83106; hypothetical protein PA4323 [imported] - Pseudomonas; E=3e-33 ddbj:BAB04451.1; (AP001509) BH0732~unknown conserved protein in; E=9e-31 COG: slr2013; COG1721 Uncharacterized ACR; E=2e-35 PFAM: PF01882; Protein of unknown function DUF; E=5.3e-19.
 
    0.797
moxR-4
Probable regulatory protein; PMID: 8997703 PMID: 1657871 PMID: 9163922 best DB hits: BLAST: pir:C83106; conserved hypothetical protein PA4322 [imported] -; E=2e-79 pir:E70792; probable regulatory protein - Mycobacterium tuberculosis; E=7e-74 embl:CAB90929.1; (AL355774) putative regulatory protein; E=2e-69 COG: PA4322; COG0714 MoxR-like ATPases; E=2e-80 PFAM: PF00004; ATPase family associated with va; E=0.0093 PF01078; Magnesium chelatase, subunit Chl; E=0.0014.
 
    0.692
moaA
Molybdopterin cofactor synthesis protein A; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate.
       0.618
RB4077
Hypothetical protein-signal peptide and transmembrane prediction; Best DB hits: BLAST: ddbj:BAB04448.1; (AP001509) BH0729~unknown conserved protein in; E=0.30.
       0.595
RB4079
Hypothetical protein-transmembrane prediction.
       0.595
RB9330
Probable fibrinogen-binding protein homolog-putative involved in cell-cell interaction; PMID: 99098700 PMID: 98261511 best DB hits: BLAST: pir:T28679; fibrinogen-binding protein homolog - Staphylococcus aureus; E=9e-46 gb:AAF72509.1; AF245041_1 (AF245041) putative cell-surface adhesin; E=1e-37 embl:CAB75732.1; (Y18653) bone sialoprotein-binding protein; E=6e-24.
  
     0.538
RB4066
Hypothetical protein.
       0.463
RB9769
Best DB hits: BLAST: pir:F83457; hypothetical protein PA1506 [imported] - Pseudomonas; E=9e-13 COG: PA1506; COG0394 Protein-tyrosine-phosphatase; E=9e-14 PFAM: PF01451; Low molecular weight phosphotyrosine; E=0.00019.
  
     0.442
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.