STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB4077Hypothetical protein-signal peptide and transmembrane prediction; Best DB hits: BLAST: ddbj:BAB04448.1; (AP001509) BH0729~unknown conserved protein in; E=0.30. (269 aa)    
Predicted Functional Partners:
RB4079
Hypothetical protein-transmembrane prediction.
       0.806
moxR-4
Probable regulatory protein; PMID: 8997703 PMID: 1657871 PMID: 9163922 best DB hits: BLAST: pir:C83106; conserved hypothetical protein PA4322 [imported] -; E=2e-79 pir:E70792; probable regulatory protein - Mycobacterium tuberculosis; E=7e-74 embl:CAB90929.1; (AL355774) putative regulatory protein; E=2e-69 COG: PA4322; COG0714 MoxR-like ATPases; E=2e-80 PFAM: PF00004; ATPase family associated with va; E=0.0093 PF01078; Magnesium chelatase, subunit Chl; E=0.0014.
       0.785
RB4073
Hypothetical protein-transmembrane region and signal peptide prediction.
      0.781
RB4071
Best DB hits: BLAST: pir:H83105; conserved hypothetical protein PA4319 [imported] -; E=3e-16 pir:S75694; hypothetical protein slr1478 - Synechocystis sp. (strain; E=2e-09 ddbj:BAB04452.1; (AP001509) BH0733~unknown conserved protein in; E=3e-05 COG: PA4319; COG1300 Uncharacterized membrane protein; E=2e-17 PFAM: PF01944; Integral membrane protein DUF95; E=0.69.
       0.595
moaA
Molybdopterin cofactor synthesis protein A; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate.
       0.431
RB4083
Hypothetical protein.
       0.426
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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