STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB4093Hypothetical protein. (45 aa)    
Predicted Functional Partners:
RB4094
Hypothetical protein.
       0.590
RB4097
Similar to ymc; Best DB hits: BLAST: gb:AAB91577.2; (AF242881) ymc [Agrobacterium tumefaciens]; E=1e-04 gb:AAF01192.1; AF179401_1 (AF179401) putative epoxidase; E=0.11 pir:D70028; conserved hypothetical protein yvaO - Bacillus subtilis; E=0.16 PFAM: PF01381; Helix-turn-helix; E=3.4e-10.
       0.512
RB4099
Hypothetical protein-transmembrane region and signal peptide prediction; Best DB hits: PFAM: PF01658; Myo-inositol-1-phosphate synth; E=0.89.
       0.512
RB4090
Hypothetical protein.
       0.470
ydcC
H repeat-associated protein ydcC; PMID: 8041625 best DB hits: BLAST: gb:AAG55028.1; AE005248_9 (AE005248) putative receptor; E=4e-61 gb:AAG54539.1; AE005200_1 (AE005200) Z0271 gene product; E=1e-60 swissprot:P28917; YDCC_ECOLI H REPEAT-ASSOCIATED PROTEIN IN; E=1e-60 PFAM: PF01811; Transposase; E=1.3e-65.
       0.470
RB4087
Probable partition protein; PMID: 11407917 best DB hits: BLAST: gb:AAB36936.1; (U77780) unknown [Chlorobium limicola]; E=6e-11 gb:AAD42964.1; AF144883_1 (AF144883) putative partition protein; E=7e-08 gb:AAD21669.1; (AF133830) pVS1 partitioning protein [Shuttle; E=8e-08 COG: DR0013; COG1192 ATPases involved in chromosome partitioning; E=1e-06 PH0612; COG0455 ATPases involved in chromosome partitioning; E=2e-04 aq_aa35; COG1192 ATPases involved in chromosome partitioning; E=2e-04 PFAM: PF02374; Anion-transporting ATPase; E=2.9e-06 PF01583; Adenylylsulfate kinase; E=0.00057 PF00991; ParA [...]
       0.462
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.