STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB4172Hypothetical protein. (46 aa)    
Predicted Functional Partners:
RB4167
Conserved hypothetical protein-similar to glucose/sorbone dehydrogenases; PMID: 96312514 best DB hits: BLAST: ddbj:BAB14717.1; (AK023902) unnamed protein product [Homo; E=4e-22 gb:AAC59865.1; (U37373) up-regulated by thyroid hormone in; E=2e-21 ddbj:BAA97210.1; (AB020751) gb AAD55298.1~gene_id:MRG21.5~strong; E=4e-19 COG: slr1608; COG2133 Glucose/sorbosone dehydrogenases; E=1e-11 sll1245; COG2010 Cytochrome c, mono- and diheme variants; E=0.003 XF1740; COG2133 Glucose/sorbosone dehydrogenases; E=0.009 PFAM: PF00034; Cytochrome c; E=0.049.
       0.648
ftsY
Cell division protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC).
       0.569
RB4174
tRNA (ms[2]io[6]A)-hydroxylase; PMID: 8253666 best DB hits: BLAST: pir:B83421; hypothetical protein PA1790 [imported] - Pseudomonas; E=2e-27 swissprot:Q08015; MIAE_SALTY TRNA-(MS[2]IO[6]A)-HYDROXYLASE; E=1e-17 pir:H82142; tRNA-(MS[2]IO[6]A)-hydroxylase VC1910 [imported] -; E=2e-14.
       0.569
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.