STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB4293Probable ovoperoxidase; PMID: 9510026 best DB hits: BLAST: gb:AAB92243.1; (AF035381) ovoperoxidase [Lytechinus variegatus]; E=4e-08 pir:T24502; hypothetical protein T06D8.10 - Caenorhabditis elegans; E=4e-07 gb:AAF53674.2; (AE003659) CG10211 gene product [Drosophila; E=2e-06. (504 aa)    
Predicted Functional Partners:
RB4292
Best DB hits: BLAST: pir:A58519; hypothetical 345 protein - Streptomyces coelicolor; E=3e-57 embl:CAC16730.1; (AL450289) conserved hypothetical protein; E=3e-50 gb:AAC59865.1; (U37373) up-regulated by thyroid hormone in; E=1e-44 COG: slr1608; COG2133 Glucose/sorbosone dehydrogenases; E=2e-16.
       0.671
RB4289
Similar to 3-isopropylmalate dehydrogenase; PMID: 11259647 best DB hits: BLAST: swissprot:O59930; LEU3_PHACH 3-ISOPROPYLMALATE DEHYDROGENASE; E=0.38.
 
     0.623
RB4288
Probable alkylhalidase homolog; Best DB hits: BLAST: gb:AAG38844.1; (AY010120) putative reductasehalogenase; E=1e-11 pir:T30590; alkylhalidase homolog - Amycolatopsis orientalis -----; E=2e-08 pir:T34627; probable electron transfer oxidoreductase - Streptomyces; E=2e-06 COG: Rv1751; COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related; E=8e-05 Ta0326; COG0644 Dehydrogenases (flavoproteins); E=0.002 BH1851; COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and; E=0.002 PFAM: PF01134; Glucose inhibited division prot; E=0.11 PF00732; GMC oxidoreductases; E=0.0013 PF01266; D-amino a [...]
 
     0.593
RB4294
Probable cysteine proteinase; PMID: 10910347 PMID: 8325504 best DB hits: BLAST: pir:C82841; cysteine proteinase XF0156 [imported] - Xylella; E=1e-13 embl:CAC18648.1; (AJ302013) cathepsin B-like cysteine protease 3; E=0.006 pir:H71456; probable pyrolysin (EC 3.4.-.-) homolog PH0310; E=0.086 PFAM: PF00112; Papain family cysteine protease; E=0.019.
       0.566
RB4285
Hypothetical protein-transmembrane prediction.
       0.515
RB4286
Conserved hypothetical protein; PMID: 20437337 best DB hits: BLAST: pir:F83498; hypothetical protein PA1166 [imported] - Pseudomonas; E=0.035 COG: PA1166; COG0412 Dienelactone hydrolase and related enzymes; E=0.003 PFAM: PF01738; Dienelactone hydrolase family; E=0.0023.
       0.515
RB11975
Polyketide synthase; PMID: 10662695 PMID: 10649995 best DB hits: BLAST: gb:AAF26921.1; AF210843_18 (AF210843) polyketide synthase [Sorangium; E=0.0 gb:AAF26923.1; AF210843_20 (AF210843) polyketide synthase [Sorangium; E=0.0 gb:AAF62883.1; AF217189_6 (AF217189) epoD [Sorangium cellulosum]; E=0.0 COG: BS_fabD; COG0331 (acyl-carrier-protein) S-malonyltransferase; E=7e-31 PA2965; COG0304 3-oxoacyl-(acyl-carrier-protein) synthase I; E=3e-28 PA5234; COG0604 NADPH:quinone reductase and related Zn-dependent; E=2e-27 PFAM: PF00108; Thiolase, N-terminal domain; E=7.3e-07 PF00109; Beta-ketoacyl s [...]
 
   
 0.507
RB6500
Mycocerosate synthase; PMID: 3880746 best DB hits: BLAST: pir:S72705; mycocerosate synthase (EC 2.3.1.111) - Mycobacterium; E=0.0 pir:H70819; probable polyketide synthase - Mycobacterium tuberculosis; E=0.0 gb:AAF62883.1; AF217189_6 (AF217189) epoD [Sorangium cellulosum]; E=1e-180 COG: PA2402_3; COG1020 Non-ribosomal peptide synthetase modules and related; E=4e-99 BS_ppsD_3; COG1020 Non-ribosomal peptide synthetase modules and; E=4e-92 PA2424_2; COG1020 Non-ribosomal peptide synthetase modules and related; E=1e-91 PFAM: PF00108; Thiolase, N-terminal domain; E=2.7e-06 PF00109; Beta-keto [...]
 
   
 0.499
RB3959
Conserved hypothetical protein; PMID: 10567266 best DB hits: BLAST: pir:E75594; conserved hypothetical protein - Deinococcus radiodurans; E=7e-11 pir:B83042; hypothetical protein PA4830 [imported] - Pseudomonas; E=6e-08 ddbj:BAB06321.1; (AP001516) BH2602~unknown conserved protein in; E=7e-07 COG: DRA0017; COG2050 Uncharacterized protein PaaI, possibly involved in; E=7e-12 PFAM: PF02584; Uncharacterized protein PaaI, COG205; E=1.4e-12.
  
     0.408
RB10423
PMID: 9406417 best DB hits: BLAST: pir:T18266; cycloinulo-oligosaccharide fructanotransferase (EC; E=4e-05 gb:AAG47946.1; AF222787_1 (AF222787) cycloinulo-oligosaccharide; E=5e-04 pir:E82410; hypothetical protein VCA0849 [imported] - Vibrio cholerae; E=0.016 PFAM: PF00801; PKD domain; E=0.36 PF00404; Dockerin type I repeat; E=0.17.
  
   0.402
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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