STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB4294Probable cysteine proteinase; PMID: 10910347 PMID: 8325504 best DB hits: BLAST: pir:C82841; cysteine proteinase XF0156 [imported] - Xylella; E=1e-13 embl:CAC18648.1; (AJ302013) cathepsin B-like cysteine protease 3; E=0.006 pir:H71456; probable pyrolysin (EC 3.4.-.-) homolog PH0310; E=0.086 PFAM: PF00112; Papain family cysteine protease; E=0.019. (306 aa)    
Predicted Functional Partners:
RB5025
Similar to cysteine proteinase; PMID: 11466286 best DB hits: BLAST: pir:T08153; cysteine proteinase (EC 3.4.22.-) - Volvox carteri f; E=0.003 pir:H71456; probable pyrolysin (EC 3.4.-.-) homolog PH0310; E=0.021 pir:C75015; probable pyrolysin (EC 3.4.-.-) homolog PAB1252; E=0.024 PFAM: PF00112; Papain family cysteine protease; E=0.071.
  
     0.595
RB4293
Probable ovoperoxidase; PMID: 9510026 best DB hits: BLAST: gb:AAB92243.1; (AF035381) ovoperoxidase [Lytechinus variegatus]; E=4e-08 pir:T24502; hypothetical protein T06D8.10 - Caenorhabditis elegans; E=4e-07 gb:AAF53674.2; (AE003659) CG10211 gene product [Drosophila; E=2e-06.
       0.566
RB4292
Best DB hits: BLAST: pir:A58519; hypothetical 345 protein - Streptomyces coelicolor; E=3e-57 embl:CAC16730.1; (AL450289) conserved hypothetical protein; E=3e-50 gb:AAC59865.1; (U37373) up-regulated by thyroid hormone in; E=1e-44 COG: slr1608; COG2133 Glucose/sorbosone dehydrogenases; E=2e-16.
       0.497
RB4296
Hypothetical protein.
       0.486
RB4288
Probable alkylhalidase homolog; Best DB hits: BLAST: gb:AAG38844.1; (AY010120) putative reductasehalogenase; E=1e-11 pir:T30590; alkylhalidase homolog - Amycolatopsis orientalis -----; E=2e-08 pir:T34627; probable electron transfer oxidoreductase - Streptomyces; E=2e-06 COG: Rv1751; COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related; E=8e-05 Ta0326; COG0644 Dehydrogenases (flavoproteins); E=0.002 BH1851; COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and; E=0.002 PFAM: PF01134; Glucose inhibited division prot; E=0.11 PF00732; GMC oxidoreductases; E=0.0013 PF01266; D-amino a [...]
       0.403
RB4289
Similar to 3-isopropylmalate dehydrogenase; PMID: 11259647 best DB hits: BLAST: swissprot:O59930; LEU3_PHACH 3-ISOPROPYLMALATE DEHYDROGENASE; E=0.38.
       0.403
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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