STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB4309ABC transporter, ATP-binding protein; PMID: 3288195 PMID: 3762695 best DB hits: BLAST: embl:CAA11724.1; (AJ223978) putative ABC transporter, YvrO; E=7e-48 gb:AAB89781.1; (AE001001) ABC transporter, ATP-binding protein; E=4e-47 embl:CAC21614.1; (AL512667) putative ABC transporter ATP-binding; E=6e-47 COG: AF1469; COG1136 ABC-type (unclassified) transport system, ATPase; E=4e-48 PFAM: PF00005; ABC transporter; E=1.7e-57. (233 aa)    
Predicted Functional Partners:
RB6983
Probable ATP-binding/permease fusion ABC transporter; PMID: 10984043 best DB hits: BLAST: pir:S76946; hypothetical protein - Synechocystis sp. (strain PCC; E=2e-34 swissprot:O31712; YKNZ_BACSU HYPOTHETICAL 42.1 KDA PROTEIN IN; E=9e-33 pir:G72385; conserved hypothetical protein - Thermotoga maritima; E=4e-30 COG: slr0594; COG0577 Predicted permease; E=2e-35 PFAM: PF02780; Transketolase, C-terminal dom; E=0.67 PF02687; Predicted permease; E=1.8e-34.
 
   0.976
RB11027
Probable ABC transport system integral membrane protein; PMID: 8843436 best DB hits: BLAST: embl:CAC09551.1; (AL442120) putative ABC transport system; E=1e-06 pir:G70821; hypothetical protein Rv0987 - Mycobacterium tuberculosis; E=0.005 ddbj:BAB06840.1; (AP001517) BH3121~unknown conserved protein; E=0.011 COG: Rv0987_1; COG0577 Predicted permease; E=8e-04 PFAM: PF02687; Predicted permease; E=3.3e-13.
 
 
 0.961
RB11033
PMID: 8843436 best DB hits: BLAST: embl:CAB89462.1; (AL354048) putative ABC transporter integral; E=2e-16 embl:CAC09551.1; (AL442120) putative ABC transport system; E=2e-11 embl:CAB62838.1; (AL133443) hypothetical protein L5529.07; E=3e-04 COG: AF1017; COG0577 Predicted permease; E=3e-05 PFAM: PF02687; Predicted permease; E=2.3e-12.
 
 
 0.961
RB7074
Conserved hypothetical protein-putative permease of ABC transporter; PMID: 9371463 best DB hits: BLAST: pir:F69192; conserved hypothetical protein MTH695 - Methanobacterium; E=0.003 gb:AAG18647.1; (AE004970) Vng0003c [Halobacterium sp. NRC-1]; E=0.015 embl:CAB89462.1; (AL354048) putative ABC transporter integral; E=0.024 COG: MTH695; COG0577 Predicted permease; E=3e-04 PFAM: PF01890; CbiG; E=0.096 PF02687; Predicted permease; E=5.7e-06 PF00951; Arterivirus GL envelope glycop; E=0.081.
  
 
 0.953
RB4314
Hypothetical protein-transmembrane prediction; PMID: 12024217 best DB hits: BLAST: pir:F69192; conserved hypothetical protein MTH695 - Methanobacterium; E=0.005 COG: MTH695; COG0577 Predicted permease; E=5e-04 PFAM: PF02687; Predicted permease; E=1.4e-20.
 
   0.930
RB4305
Conserved hypothetical protein; PMID: 9371463 PMID: 10783239 best DB hits: BLAST: pir:F69192; conserved hypothetical protein MTH695 - Methanobacterium; E=2e-09 pir:B75516; conserved hypothetical protein - Deinococcus radiodurans; E=7e-04 pir:H82146; conserved hypothetical protein VC1882 [imported] -; E=0.007 COG: MTH695; COG0577 Predicted permease; E=2e-10 PFAM: PF02687; Predicted permease; E=1.5e-21.
 
   0.919
RB4310
Probable membrane protein; PMID: 9301333 PMID: 2249654 best DB hits: BLAST: swissprot:P32716; YJCR_ECOLI HYPOTHETICAL 36.9 KDA PROTEIN IN; E=3e-04 gb:AAG59280.1; AE005641_5 (AE005641) putative membrane protein; E=4e-04 pir:S76813; hypothetical protein sll1481 - Synechocystis sp. (strain; E=0.002 COG: yjcR; COG1566 Multidrug resistance efflux pump; E=2e-05 sll1481; COG0845 Membrane-fusion protein; E=2e-04 PA5159; COG1566 Multidrug resistance efflux pump; E=4e-04 PFAM: PF02017; CIDE-N domain; E=0.19 PF00364; Biotin-requiring enzyme; E=0.018.
 
   0.881
nrtC
Nitrate transport ATP-binding protein; PMID: 9495773 PMID: 8437564 best DB hits: BLAST: swissprot:P73450; NRTC_SYNY3 NITRATE TRANSPORT ATP-BINDING PROTEIN; E=3e-61 gb:AAB86900.1; (L27431) nitrate transporter component; NasF; E=2e-51 pir:S75959; nitrate transport protein C-1 - Synechocystis sp; E=6e-49 COG: sll1452_2; COG0715 ABC-type nitrate/sulfonate/taurine/bicarbonate; E=3e-62.
 
      0.839
RB4311
Hypothetical protein-transmembrane region and signal peptide prediction.
       0.793
RB6502
PMID: 9371463 best DB hits: BLAST: pir:F69192; conserved hypothetical protein MTH695 - Methanobacterium; E=2e-30 swissprot:Q58902; YF07_METJA HYPOTHETICAL PROTEIN MJ1507 -----; E=5e-10 gb:AAB89778.1; (AE001001) conserved hypothetical protein; E=2e-09 COG: MTH695; COG0577 Predicted permease; E=2e-31 PFAM: PF02687; Predicted permease; E=4.3e-26.
  
   0.791
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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