STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB4310Probable membrane protein; PMID: 9301333 PMID: 2249654 best DB hits: BLAST: swissprot:P32716; YJCR_ECOLI HYPOTHETICAL 36.9 KDA PROTEIN IN; E=3e-04 gb:AAG59280.1; AE005641_5 (AE005641) putative membrane protein; E=4e-04 pir:S76813; hypothetical protein sll1481 - Synechocystis sp. (strain; E=0.002 COG: yjcR; COG1566 Multidrug resistance efflux pump; E=2e-05 sll1481; COG0845 Membrane-fusion protein; E=2e-04 PA5159; COG1566 Multidrug resistance efflux pump; E=4e-04 PFAM: PF02017; CIDE-N domain; E=0.19 PF00364; Biotin-requiring enzyme; E=0.018. (519 aa)    
Predicted Functional Partners:
RB4314
Hypothetical protein-transmembrane prediction; PMID: 12024217 best DB hits: BLAST: pir:F69192; conserved hypothetical protein MTH695 - Methanobacterium; E=0.005 COG: MTH695; COG0577 Predicted permease; E=5e-04 PFAM: PF02687; Predicted permease; E=1.4e-20.
 
     0.934
RB4305
Conserved hypothetical protein; PMID: 9371463 PMID: 10783239 best DB hits: BLAST: pir:F69192; conserved hypothetical protein MTH695 - Methanobacterium; E=2e-09 pir:B75516; conserved hypothetical protein - Deinococcus radiodurans; E=7e-04 pir:H82146; conserved hypothetical protein VC1882 [imported] -; E=0.007 COG: MTH695; COG0577 Predicted permease; E=2e-10 PFAM: PF02687; Predicted permease; E=1.5e-21.
 
     0.900
RB4309
ABC transporter, ATP-binding protein; PMID: 3288195 PMID: 3762695 best DB hits: BLAST: embl:CAA11724.1; (AJ223978) putative ABC transporter, YvrO; E=7e-48 gb:AAB89781.1; (AE001001) ABC transporter, ATP-binding protein; E=4e-47 embl:CAC21614.1; (AL512667) putative ABC transporter ATP-binding; E=6e-47 COG: AF1469; COG1136 ABC-type (unclassified) transport system, ATPase; E=4e-48 PFAM: PF00005; ABC transporter; E=1.7e-57.
 
   0.881
RB4311
Hypothetical protein-transmembrane region and signal peptide prediction.
       0.806
RB4308
Hypothetical protein.
       0.773
RB4306
Conserved hypothetical protein-putative transposase; PMID: 11292750 best DB hits: BLAST: swissprot:P03835; YI41_ECOLI INSERTION ELEMENT IS4 HYPOTHETICAL; E=0.030 embl:CAA57483.1; (X81894) ORF [Enterobacter agglomerans]; E=0.064 COG: yi41; COG3385 Predicted transposase; E=0.003.
       0.746
RB5421
PMID: 9406417 PMID: 11157277 best DB hits: BLAST: pir:T18266; cycloinulo-oligosaccharide fructanotransferase (EC; E=0.10 gb:AAG47946.1; AF222787_1 (AF222787) cycloinulo-oligosaccharide; E=0.22.
  
     0.711
RB4317
Hypothetical protein-transmembrane region and signal peptide prediction.
       0.682
RB2038
Best DB hits: BLAST: pir:T26963; hypothetical protein ZK1151.2a - Caenorhabditis elegans; E=0.089 pir:T26964; hypothetical protein ZK1151.2b - Caenorhabditis elegans; E=0.089 ddbj:BAA96036.1; (AB040945) KIAA1512 protein [Homo sapiens]; E=0.50 PFAM: PF00817; impB/mucB/samB family; E=0.24.
  
     0.592
RB1120
Conserved hypothetical protein; PMID: 10984043 best DB hits: BLAST: pir:B83071; hypothetical protein PA4592 [imported] - Pseudomonas; E=1e-04 PFAM: PF02321; Outer membrane efflux protein; E=0.00035.
  
   0.575
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.