STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB4394PMID: 96196168 best DB hits: BLAST: pir:T34745; probable proteinase pfpI - Streptomyces coelicolor; E=6e-55 pir:F75423; proteinase I - Deinococcus radiodurans (strain R1); E=1e-50 pir:E83601; proteinase PfpI PA0355 [imported] - Pseudomonas; E=3e-40 COG: DR1199; COG0693 Putative intracellular protease/amidase; E=1e-51 BH1980; COG0753 Catalase; E=4e-07 BB0621; COG0693 Putative intracellular protease/amidase; E=4e-07 PFAM: PF00117; Glutamine amidotransferase class-I; E=0.13 PF01965; ThiJ/PfpI family; E=1.1e-61. (188 aa)    
Predicted Functional Partners:
RB4393
Hypothetical protein.
       0.773
RB4392
Hypothetical protein.
       0.625
RB4396
Glutathione reductase; PMID: 7559423 best DB hits: BLAST: swissprot:P48638; GSHR_ANASP GLUTATHIONE REDUCTASE (GR) (GRASE); E=7e-50 embl:CAA12270.1; (AJ224977) ORF 4 [Sphingomonas sp. RW5]; E=2e-49 gb:AAK04944.1; AE006318_7 (AE006318) glutathione reductase (EC; E=6e-49 COG: gor; COG1249 Dihydrolipoamide dehydrogenase/glutathione; E=4e-49 PFAM: PF00996; GDP dissociation inhibitor; E=0.34 PF00070; Pyridine nucleotide-disulphide; E=3.3e-62 PF02852; Pyridine nucleotide-disulphide; E=3.4e-06.
   
 
 0.567
RB4395
Probable macrophage infectivity potentiator protein Mip; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
       0.547
katA
Catalase; PMID: 9358059 best DB hits: BLAST: gb:AAB26985.1; (L48340) catalase [Methylobacterium extorquens]; E=0.0 swissprot:Q59714; CATA_PSEPU CATALASE ----- gb: AAB88219.1; E=1e-152 swissprot:P48062; CATA_BORPE CATALASE ----- pir: S60757; E=1e-152 COG: PA4236; COG0753 Catalase; E=1e-153 PFAM: PF01334; Bacterioferritin; E=0.24 PF00199; Catalase; E=1.7e-261.
  
 
 0.519
RB4386
Cysteine synthase; PMID: 93345669 best DB hits: BLAST: swissprot:Q44004; CYSM_ALCEU CYSTEINE SYNTHASE (O-ACETYLSERINE; E=2e-35 pir:T43792; cysteine synthase (EC 4.2.99.8) cysK [similarity] -; E=1e-31 pir:H81161; probable cysteine synthase (EC 4.2.99.8) NMA0974; E=3e-31 COG: NMB0763; COG0031 Cysteine synthase; E=2e-32 PFAM: PF00291; Pyridoxal-phosphate dependent enzyme; E=9.2e-57.
     
 0.468
RB4381
Hypothetical protein.
       0.463
RB4382
Probable diaminopimelate decarboxylase; PMID: 6350601 PMID: 89056708 PMID: 94237165 best DB hits: BLAST: swissprot:P55709; Y4YA_RHISN HYPOTHETICAL 49.9 KD PROTEIN Y4YA; E=3e-40 gb:AAG45731.1; AF229441_2 (AF229441) y4yA [Sinorhizobium fredii]; E=3e-40 gb:AAG45729.1; AF229440_2 (AF229440) y4yA [Sinorhizobium fredii]; E=3e-33 COG: aq_728; COG0019 Diaminopimelate decarboxylase; E=7e-08 PA4839; COG1166 Arginine decarboxylase (spermidine biosynthesis); E=5e-05 XF1116_2; COG0019 Diaminopimelate decarboxylase; E=5e-05 PFAM: PF02784; Pyridoxal-dependent decarboxyla; E=5.9e-08.
       0.463
RB4383
Conserved hypothetical protein; Best DB hits: BLAST: gb:AAG56655.1; AE005390_2 (AE005390) orf, hypothetical protein; E=5e-05 swissprot:P77148; YDHS_ECOLI HYPOTHETICAL 60.8 KDA PROTEIN IN; E=1e-04.
  
    0.463
RB4389
Hypothetical protein.
       0.463
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.