STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB4433Probable DNA protection during starvation protein; PMID: 1340475 PMID: 8021175 best DB hits: BLAST: pir:T35689; hypothetical protein SC7C7.11 SC7C7.11 - Streptomyces; E=5e-30 swissprot:Q47953; FTPA_HAEDU FINE TANGLED PILI MAJOR SUBUNIT (24; E=1e-17 embl:CAB61290.1; (AL132991) putative DNA-binding protein; E=3e-16 COG: dps; COG0783 Starvation-inducible DNA-binding protein; E=1e-14 PFAM: PF02047; Dps protein family; E=4.1e-45. (162 aa)    
Predicted Functional Partners:
RB12137
Conserved hypothetical protein; PMID: 10952301 best DB hits: BLAST: swissprot:Q9KSW3; YB43_VIBCH HYPOTHETICAL PROTEIN VC1143 -----; E=2e-07 swissprot:Q9I0L7; YQ21_PSEAE HYPOTHETICAL PROTEIN PA2621; E=2e-04 swissprot:P75832; YLJA_ECOLI PROTEIN YLJA ----- pir: A64827; E=9e-04 COG: VC1143; COG2127 Uncharacterized ACR; E=2e-08 PFAM: PF02617; Uncharacterized ACR, COG2127; E=1.6e-08; Belongs to the ClpS family.
   
 
 0.893
RB5363
Flavodoxin; PMID: 1991710 best DB hits: BLAST: swissprot:O67866; FLAV_AQUAE FLAVODOXIN ----- pir: F70479; E=3e-48 swissprot:P18855; FLAV_CLOAB FLAVODOXIN ----- pir: A38177; E=2e-13 pir:G82110; Trp repressor-binding protein VC2166 [imported] - Vibrio; E=6e-13 COG: aq_2096; COG0655 Multimeric flavodoxin WrbA; E=3e-49 AF1520; COG0426 Uncharacterized flavoproteins; E=0.006 PFAM: PF00258; Flavodoxin; E=1.4e-08.
  
  
 0.759
RB8580
Probable sigma-54 modulation protein; Best DB hits: BLAST: pir:B53373; hypothetical protein 1 (rpoN 3' region) - Pseudomonas; E=0.004 pir:G82065; probable sigma-54 modulation protein VC2530 [imported]; E=0.005 swissprot:P17160; RP5M_AZOVI PROBABLE SIGMA(54) MODULATION; E=0.007 COG: VC2530; COG1544 Ribosome-associated protein Y (PSrp-1); E=5e-04 PFAM: PF02482; Sigma 54 modulation protein / S; E=0.0074.
  
    0.737
prdX2
Peroxiredoxin 2; PMID: 9115640 best DB hits: BLAST: ref:XP_009063.1; TR00071480_p [Homo sapiens]; E=2e-62 swissprot:Q61171; PDX2_MOUSE PEROXIREDOXIN 2 (THIOREDOXIN; E=3e-62 swissprot:P32119; PDX2_HUMAN PEROXIREDOXIN 2 (THIOREDOXIN; E=4e-62 COG: PA0848; COG0450 Thiol - alkyl hydroperoxide reductases; E=4e-60 PFAM: PF00578; AhpC/TSA family; E=1e-71.
  
  
 0.732
RB4432
Putative oxidoreductase of the short-chain dehydrogenase family; Best DB hits: BLAST: gb:AAG57269.1; AE005445_6 (AE005445) putative oxidoreductase; E=4e-41 swissprot:P33368; YOHF_ECOLI HYPOTHETICAL OXIDOREDUCTASE IN; E=8e-41 pir:G75333; 3-oxoacyl-acyl carrier protein reductase - Deinococcus; E=7e-33 COG: yohF; COG1028 Dehydrogenases with different specificities (related; E=8e-42 BS_ycdF; COG1028 Dehydrogenases with different specificities; E=2e-31 TM1724; COG1028 Dehydrogenases with different specificities (related; E=4e-25 PFAM: PF00106; short chain dehydrogenase; E=1.7e-42 PF00678; S [...]
  
  
 0.636
RB4436
Hypothetical protein-transmembrane region and signal peptide prediction.
  
    0.595
RB4438
Probable general stress protein 26; PMID: 8012595 best DB hits: BLAST: pir:D75431; probable general stress protein 26 - Deinococcus; E=4e-18 pir:D75427; hypothetical protein - Deinococcus radiodurans (strain; E=2e-07 swissprot:P80238; GS26_BACSU GENERAL STRESS PROTEIN 26 (GSP26); E=0.10.
  
  
 0.569
sodA
Superoxide dismutase, Mn family; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
 
  
 0.559
RB4429
Conserved hypothetical protein; PMID: 11743193 best DB hits: BLAST: embl:CAC16998.1; (AL450350) hypothetical protein [Streptomyces; E=0.45.
       0.438
trxB
Putative thioredoxin reductase; PMID: 8843436 best DB hits: BLAST: embl:CAB93736.1; (AL357613) putative thioredoxin reductase; E=2e-67 pir:H72322; thioredoxin reductase - Thermotoga maritima (strain; E=2e-27 ddbj:BAB07290.1; (AP001519) thioredoxin reductase (NADPH); E=1e-26 COG: TM0869; COG0492 Thioredoxin reductase/alkyl hydroperoxide reductase; E=2e-28 VNG1259G; COG0492 Thioredoxin reductase/alkyl hydroperoxide; E=1e-21 aq_500; COG0492 Thioredoxin reductase/alkyl hydroperoxide reductase; E=1e-20 PFAM: PF00027; Cyclic nucleotide-binding domai; E=1.6e-07 PF00732; GMC oxidoreductases; E [...]
  
  
 0.430
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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