STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB448Conserved hypothetical protein; PMID: 9266672 best DB hits: BLAST: swissprot:O15442; 239A_HUMAN ADULT BRAIN PROTEIN 239 (239AB); E=0.014 gb:AAC51673.2; (U84894) 239AB [Homo sapiens]; E=0.014 ref:XP_013018.1; chromosome 22 open reading frame 1 [Homo; E=0.014 PFAM: PF01143; Uncharacterized phosphoesterase fami; E=0.00034. (70 aa)    
Predicted Functional Partners:
RB449
Hypothetical protein.
       0.773
RB450
Hypothetical protein.
       0.773
RB446
Conserved hypothetical protein; PMID: 9266672 best DB hits: BLAST: swissprot:O15442; 239A_HUMAN ADULT BRAIN PROTEIN 239 (239AB); E=4e-19 gb:AAC51673.2; (U84894) 239AB [Homo sapiens]; E=4e-19 prf:2122285A; 239FB gene [Homo sapiens]; E=1e-17 COG: APE2283; COG2129 Predicted phosphoesterases, related to the Icc; E=4e-06.
       0.608
RB451
Probable site-specific DNA-methyltransferase (cytosine-specific)-putative transcriptional regulator; PMID: 7607524 best DB hits: BLAST: swissprot:P50196; MTE8_ECOLI MODIFICATION METHYLASE ECO47II; E=4e-04 swissprot:P45876; DCMR_METSP TRANSCRIPTIONAL REPRESSOR DCMR; E=0.002 pir:T36638; probable substrate binding protein - Streptomyces; E=0.031.
       0.565
RB452
Conserved hypothetical protein; PMID: 9679194 best DB hits: BLAST: pir:F71079; hypothetical protein PH0902 - Pyrococcus horikoshii; E=8e-08 pir:G75134; hypothetical protein PAB0589 - Pyrococcus abyssi (strain; E=3e-07 pir:G72734; hypothetical protein APE0415 - Aeropyrum pernix (strain; E=0.10 COG: PH0902; COG1483 Predicted ATPase of the AAA+ class; E=7e-09.
       0.441
RB453
Hypothetical protein.
       0.441
RB454
PMID: 9389475 best DB hits: BLAST: ref:NP_071283.1; Predicted DNA methylase containing a Zn-ribbon; E=9e-14 pir:H72310; conserved hypothetical protein - Thermotoga maritima; E=4e-09 pir:A71080; hypothetical protein PH0905 - Pyrococcus horikoshii; E=8e-07 COG: AF2345+6+7; COG1743 Predicted DNA methylase containing a Zn-ribbon; E=8e-15.
       0.441
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.