STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB4502Hypothetical protein-transmembrane prediction; Best DB hits: BLAST: pir:T26079; hypothetical protein W02A2.5 - Caenorhabditis elegans; E=0.21 PFAM: PF01679; Uncharacterized protein family UPF00; E=2.1e-11. (59 aa)    
Predicted Functional Partners:
RB10966
Hypothetical protein-transmembrane region and signal peptide prediction; Best DB hits: BLAST: ddbj:BAA95845.1; (AP002070) Similar to Arabidopsis thaliana low; E=0.053 gb:AAF26091.1; AC012393_17 (AC012393) low temperature and salt; E=0.069 gb:AAF26090.1; AC012393_16 (AC012393) low temperature and salt; E=0.088 PFAM: PF01679; Uncharacterized protein family UPF00; E=1.8e-13.
  
     0.754
RB4504
Conserved hypothetical protein-putative membrane protein; Best DB hits: BLAST: ddbj:BAB06016.1; (AP001515) BH2297~unknown conserved protein; E=3e-13 ddbj:BAB05689.1; (AP001513) BH1970~unknown conserved protein; E=2e-10 pir:A69782; probable membrane protein ydfS - Bacillus subtilis; E=6e-08 COG: BH2297; COG2323 Predicted membrane protein; E=3e-14.
 
     0.587
RB4500
Hypothetical protein-transmembrane prediction; Best DB hits: BLAST: swissprot:AHNK_HUMAN_2; [Segment 2 of 2] NEUROBLAST DIFFERENTIATION; E=0.006 pir:A45259; desmoyokin - human (fragments); E=0.018.
       0.579
RB4505
Conserved hypothetical protein-putative integral membrane protein; PMID: 11248100 best DB hits: BLAST: gb:AAK03159.1; (AE006148) unknown [Pasteurella multocida]; E=3e-53 embl:CAC10327.1; (AL442629) putative integral membrane protein; E=0.020 PFAM: PF01260; AP endonuclease family 1; E=0.4.
 
     0.486
RB4498
Hypothetical protein.
       0.418
RB4499
Hypothetical protein.
       0.418
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.