STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB4513PMID: 95012680 best DB hits: BLAST: pir:G75252; probable brkB protein - Deinococcus radiodurans (strain; E=3e-19 pir:I40328; serum-resistance protein brkB [imported] - Bordetella; E=2e-12 pir:A82807; BrkB protein XF0432 [imported] - Xylella fastidiosa; E=2e-09 COG: DR2609; COG1295 tRNA-processing ribonuclease BN; E=2e-20. (326 aa)    
Predicted Functional Partners:
RB4514
Probable RNA polymerase ECF-type sigma factor; PMID: 94329558 PMID: 89024591 best DB hits: BLAST: ddbj:BAB03982.1; (AP001507) RNA polymerase ECF-type sigma factor; E=2e-07 embl:CAA09264.1; (AJ010601) ECF sigma factor [Streptomyces; E=2e-04 swissprot:Q45585; SIGW_BACSU RNA POLYMERASE SIGMA FACTOR SIGW; E=3e-04 COG: BH0263; COG1595 DNA-directed RNA polymerase specialized sigma; E=2e-08 PFAM: PF00776; Sigma-70 factor (ECF subfamily); E=3.9e-10.
       0.613
lldP
L-lactate permease; Transports L-lactate across the membrane. Can also transport D-lactate and glycolate; Belongs to the lactate permease family.
 
      0.567
RB4517
Probable pterin-4-alpha-carbinolamine dehydratase; PMID: 8108417 PMID: 97052967 best DB hits: BLAST: pir:C70304; 4a-hydroxytetrahydrobiopterin dehydratase (EC 4.2.1.96); E=2e-10 ddbj:BAA97373.1; (AB023044) gene_id:MWD22.5~similar to unknown; E=5e-10 swissprot:P43335; PHS_PSEAE PTERIN-4-ALPHA-CARBINOLAMINE; E=4e-09 COG: aq_049; COG2154 Pterin-4a-carbinolamine dehydratase; E=2e-11 PFAM: PF01329; Pterin 4 alpha carbinolamine dehydr; E=1.2e-18.
       0.451
RB4519
Hypothetical protein.
       0.451
RB1728
Conserved hypothetical protein-putative integraal membrane protein; PMID: 8867804 best DB hits: BLAST: swissprot:P39139; YXXB_BACSU HYPOTHETICAL 31.8 KD PROTEIN IN DEOR; E=6e-24 pir:S49453; hypothetical protein - Bacillus subtilis -----embl:; E=4e-04.
  
     0.431
RB792
Probable Na+/H+ antiporter; PMID: 9537504 best DB hits: BLAST: pir:H83377; probable transporter PA2135 [imported] - Pseudomonas; E=2e-35 ddbj:BAB07757.1; (AP001520) Na+H+ antiporter [Bacillus; E=0.002 gb:AAF72041.1; AF128238_1 (AF128238) Na+H+ antiporter Cnh1; E=0.003 COG: PA2135; COG0025 NhaP-type Na+/H+ and K+/H+ antiporters; E=1e-36 PFAM: PF00999; Sodium/hydrogen exchanger fami; E=1.3e-14.
 
     0.421
RB4438
Probable general stress protein 26; PMID: 8012595 best DB hits: BLAST: pir:D75431; probable general stress protein 26 - Deinococcus; E=4e-18 pir:D75427; hypothetical protein - Deinococcus radiodurans (strain; E=2e-07 swissprot:P80238; GS26_BACSU GENERAL STRESS PROTEIN 26 (GSP26); E=0.10.
 
    0.414
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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