STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB4522Hypothetical protein. (445 aa)    
Predicted Functional Partners:
RB4527
3-oxoacyl-(acyl-carrier protein) synthase; PMID: 7972002 PMID: 7768872 best DB hits: BLAST: ddbj:BAB06601.1; (AP001517) 3-oxoacyl-(acyl-carrier protein); E=9e-37 pir:S77464; 3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41); E=1e-34 pir:G69842; 3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41); E=1e-34 COG: BH2882; COG0304 3-oxoacyl-(acyl-carrier-protein) synthase I; E=8e-38 PFAM: PF00109; Beta-ketoacyl synthase, N-ter; E=3.2e-10; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
       0.565
RB4526
Hypothetical protein.
       0.561
RB4517
Probable pterin-4-alpha-carbinolamine dehydratase; PMID: 8108417 PMID: 97052967 best DB hits: BLAST: pir:C70304; 4a-hydroxytetrahydrobiopterin dehydratase (EC 4.2.1.96); E=2e-10 ddbj:BAA97373.1; (AB023044) gene_id:MWD22.5~similar to unknown; E=5e-10 swissprot:P43335; PHS_PSEAE PTERIN-4-ALPHA-CARBINOLAMINE; E=4e-09 COG: aq_049; COG2154 Pterin-4a-carbinolamine dehydratase; E=2e-11 PFAM: PF01329; Pterin 4 alpha carbinolamine dehydr; E=1.2e-18.
       0.480
RB4519
Hypothetical protein.
       0.480
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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