STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB454PMID: 9389475 best DB hits: BLAST: ref:NP_071283.1; Predicted DNA methylase containing a Zn-ribbon; E=9e-14 pir:H72310; conserved hypothetical protein - Thermotoga maritima; E=4e-09 pir:A71080; hypothetical protein PH0905 - Pyrococcus horikoshii; E=8e-07 COG: AF2345+6+7; COG1743 Predicted DNA methylase containing a Zn-ribbon; E=8e-15. (1003 aa)    
Predicted Functional Partners:
RB452
Conserved hypothetical protein; PMID: 9679194 best DB hits: BLAST: pir:F71079; hypothetical protein PH0902 - Pyrococcus horikoshii; E=8e-08 pir:G75134; hypothetical protein PAB0589 - Pyrococcus abyssi (strain; E=3e-07 pir:G72734; hypothetical protein APE0415 - Aeropyrum pernix (strain; E=0.10 COG: PH0902; COG1483 Predicted ATPase of the AAA+ class; E=7e-09.
 
     0.951
RB460
PMID: 155284 best DB hits: BLAST: pir:T17395; probable DEAH ATP-dependent helicase - Dichelobacter; E=2e-14 gb:AAG20812.1; (AE005149) ATP-dependent RNA helicase; HepA; E=2e-14 pir:D71079; hypothetical protein PH0900 - Pyrococcus horikoshii; E=1e-11 COG: PH0900; COG0553 Superfamily II DNA/RNA helicases, SNF2 family; E=1e-12 MJ0669; COG0513 Superfamily II DNA and RNA helicases; E=8e-08 AF2350; COG0553 Superfamily II DNA/RNA helicases, SNF2 family; E=4e-07 PFAM: PF00176; SNF2 and others N-terminal domain; E=7.6e-06 PF00271; Helicase conserved C-terminal doma; E=1.1e-12.
 
     0.892
RB453
Hypothetical protein.
       0.794
RB451
Probable site-specific DNA-methyltransferase (cytosine-specific)-putative transcriptional regulator; PMID: 7607524 best DB hits: BLAST: swissprot:P50196; MTE8_ECOLI MODIFICATION METHYLASE ECO47II; E=4e-04 swissprot:P45876; DCMR_METSP TRANSCRIPTIONAL REPRESSOR DCMR; E=0.002 pir:T36638; probable substrate binding protein - Streptomyces; E=0.031.
       0.590
RB457
Conserved hypothetical protein; PMID: 8688087 best DB hits: BLAST: gb:AAC37104.1; (L77118) M. jannaschii predicted coding region; E=4e-04 gb:AAG45955.1; AF282921_1 (AF282921) putative RecF protein; E=0.005 embl:CAA71688.1; (Y10687) purine NTPase [Sulfolobus; E=0.047 COG: jhp0346; COG1106 Predicted ATPases; E=0.005 PFAM: PF02463; SMC domain N terminal domain; E=5.1e-06.
       0.533
RB459
Hypothetical protein.
       0.516
RB461
Conserved hypothetical protein; PMID: 11016950 best DB hits: BLAST: gb:AAG20152.1; (AE005093) Vng1977h [Halobacterium sp. NRC-1]; E=0.002.
       0.506
RB464
Hypothetical protein.
       0.447
RB448
Conserved hypothetical protein; PMID: 9266672 best DB hits: BLAST: swissprot:O15442; 239A_HUMAN ADULT BRAIN PROTEIN 239 (239AB); E=0.014 gb:AAC51673.2; (U84894) 239AB [Homo sapiens]; E=0.014 ref:XP_013018.1; chromosome 22 open reading frame 1 [Homo; E=0.014 PFAM: PF01143; Uncharacterized phosphoesterase fami; E=0.00034.
       0.441
RB449
Hypothetical protein.
       0.441
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.